Benchling Analysis Template Data Frame Variable API

Defines a data frame placeholder within an AnalysisTemplate that users must provide when applying the template. Each variable specifies which PipelineStep input (replaceStep, replaceStepData, replaceStepDataIndex) will receive the user-provided data frame. The replaceDataFrameColumnsSpec field defines the expected column structure that the provided data must match. When users apply an analysis template to create an Analysis, they provide bindings that map actual data frames to these variables, populating the template's pipeline with real data.

Operations 2

GET /analysis-template-data-frame-variable/items List AnalysisTemplateDataFrameVariable items #
GET /analysis-template-data-frame-variable/{analysis_template_data_frame_variable_id} Get AnalysisTemplateDataFrameVariable by ID #

Documentation

Specifications

Other Resources

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OpenAPI Specification

benchling-analysistemplatedataframevariable-api-openapi.yml Raw ↑
openapi: 3.2.0
info:
  license:
    name: Apache 2.0
    url: http://www.apache.org/licenses/LICENSE-2.0.html
  title: Benchling Analysis Template Data Frame Variable API
  version: 2.0.0
  description: 'Defines a data frame placeholder within an AnalysisTemplate that users must provide when

    applying the template. Each variable specifies which PipelineStep input (replaceStep,

    replaceStepData, replaceStepDataIndex) will receive the user-provided data frame. The

    replaceDataFrameColumnsSpec field defines the expected column structure that the provided

    data must match. When users apply an analysis template to create an Analysis, they provide

    bindings that map actual data frames to these variables, populating the template''s pipeline

    with real data.'
servers:
- url: /api/v3
security:
- oAuth: []
- basicApiKeyAuth: []
tags:
- description: 'Defines a data frame placeholder within an AnalysisTemplate that users must provide when

    applying the template. Each variable specifies which PipelineStep input (replaceStep,

    replaceStepData, replaceStepDataIndex) will receive the user-provided data frame. The

    replaceDataFrameColumnsSpec field defines the expected column structure that the provided

    data must match. When users apply an analysis template to create an Analysis, they provide

    bindings that map actual data frames to these variables, populating the template''s pipeline

    with real data.'
  name: AnalysisTemplateDataFrameVariable
  x-bnch-organization: Benchling
paths:
  /analysis-template-data-frame-variable/items:
    get:
      description: List AnalysisTemplateDataFrameVariable items.
      operationId: AnalysisTemplateDataFrameVariable.List
      parameters:
      - $ref: '#/components/parameters/archiveReason.anyOf'
      - $ref: '#/components/parameters/archived.anyOf'
      - $ref: '#/components/parameters/createdAt.gt'
      - $ref: '#/components/parameters/createdAt.gte'
      - $ref: '#/components/parameters/createdAt.lt'
      - $ref: '#/components/parameters/createdAt.lte'
      - $ref: '#/components/parameters/id.anyOf'
      - $ref: '#/components/parameters/modifiedAt.gt'
      - $ref: '#/components/parameters/modifiedAt.gte'
      - $ref: '#/components/parameters/modifiedAt.lt'
      - $ref: '#/components/parameters/modifiedAt.lte'
      - $ref: '#/components/parameters/nextToken'
      - $ref: '#/components/parameters/omit'
      - $ref: '#/components/parameters/pageSize'
      - $ref: '#/components/parameters/returning'
      - description: 'Method by which to order results. Valid sorts are: createdAt (created time, oldest first) and modifiedAt (modified time, oldest first). Use :asc or :desc to specify ascending or descending order. Default is modifiedAt:desc.'
        in: query
        name: sort
        schema:
          default: modifiedAt:desc
          enum:
          - createdAt:asc
          - createdAt:desc
          - modifiedAt:asc
          - modifiedAt:desc
          type: string
      - description: Set to true to access beta operations via /api/v3.
        in: header
        name: EARLY-ACCESS
        required: false
        schema:
          type: string
      responses:
        '200':
          content:
            application/json:
              schema:
                $ref: '#/components/schemas/AnalysisTemplateDataFrameVariablePaginatedList'
          description: OK
          headers: {}
        '400':
          $ref: '#/components/responses/BadRequest'
        '403':
          $ref: '#/components/responses/Forbidden'
        '404':
          $ref: '#/components/responses/NotFound'
        '429':
          $ref: '#/components/responses/TooManyRequests'
        '500':
          $ref: '#/components/responses/InternalServerError'
      summary: List AnalysisTemplateDataFrameVariable items
      tags:
      - AnalysisTemplateDataFrameVariable
      x-bnch-rate-limit-tier: 4
  /analysis-template-data-frame-variable/{analysis_template_data_frame_variable_id}:
    get:
      description: Get a single AnalysisTemplateDataFrameVariable by ID.
      operationId: AnalysisTemplateDataFrameVariable.Get
      parameters:
      - description: ID of the AnalysisTemplateDataFrameVariable.
        in: path
        name: analysis_template_data_frame_variable_id
        required: true
        schema:
          type: string
      - $ref: '#/components/parameters/returning'
      - $ref: '#/components/parameters/omit'
      - description: Set to true to access beta operations via /api/v3.
        in: header
        name: EARLY-ACCESS
        required: false
        schema:
          type: string
      responses:
        '200':
          content:
            application/json:
              schema:
                $ref: '#/components/schemas/AnalysisTemplateDataFrameVariable'
          description: OK
          headers: {}
        '400':
          $ref: '#/components/responses/BadRequest'
        '403':
          $ref: '#/components/responses/Forbidden'
        '404':
          $ref: '#/components/responses/NotFound'
        '429':
          $ref: '#/components/responses/TooManyRequests'
        '500':
          $ref: '#/components/responses/InternalServerError'
      summary: Get AnalysisTemplateDataFrameVariable by ID
      tags:
      - AnalysisTemplateDataFrameVariable
      x-bnch-rate-limit-tier: 5
components:
  parameters:
    pageSize:
      description: Number of results to return. Defaults to 50, maximum of 100.
      in: query
      name: pageSize
      schema:
        type: integer
    createdAt.gte:
      description: Datetime, in RFC 3339 format. Time zone defaults to UTC. Restricts results to those created at or after the specified time. e.g. >= 2017-04-30.
      in: query
      name: createdAt.gte
      schema:
        format: datetime
        type: string
    modifiedAt.gt:
      description: Datetime, in RFC 3339 format. Time zone defaults to UTC. Restricts results to those modified after the specified time. e.g. > 2017-04-30.
      in: query
      name: modifiedAt.gt
      schema:
        format: datetime
        type: string
    modifiedAt.lte:
      description: Datetime, in RFC 3339 format. Time zone defaults to UTC. Restricts results to those modified at or before the specified time. e.g. <= 2017-04-30.
      in: query
      name: modifiedAt.lte
      schema:
        format: datetime
        type: string
    omit:
      description: Comma-separated list of top-level fields to omit from each returned item. Cannot overlap with returning.
      explode: false
      in: query
      name: omit
      schema:
        items:
          type: string
        type: array
    id.anyOf:
      description: Restricts results to those matching any of the specified IDs. Comma-separated list.
      explode: false
      in: query
      name: id.anyOf
      schema:
        items:
          type: string
        maxItems: 100
        type: array
    modifiedAt.lt:
      description: Datetime, in RFC 3339 format. Time zone defaults to UTC. Restricts results to those modified before the specified time. e.g. < 2017-04-30.
      in: query
      name: modifiedAt.lt
      schema:
        format: datetime
        type: string
    createdAt.gt:
      description: Datetime, in RFC 3339 format. Time zone defaults to UTC. Restricts results to those created after the specified time. e.g. > 2017-04-30.
      in: query
      name: createdAt.gt
      schema:
        format: datetime
        type: string
    createdAt.lt:
      description: Datetime, in RFC 3339 format. Time zone defaults to UTC. Restricts results to those created before the specified time. e.g. < 2017-04-30.
      in: query
      name: createdAt.lt
      schema:
        format: datetime
        type: string
    archiveReason.anyOf:
      description: Restricts items to those with any of the specified archive reasons. Use "NOT_ARCHIVED" to filter for unarchived items. Use "ANY_ARCHIVED" to filter for archived items regardless of reason. Use "ANY_ARCHIVED_OR_NOT_ARCHIVED" to return items for both archived and unarchived. Comma-separated list.
      explode: false
      in: query
      name: archiveReason.anyOf
      schema:
        items:
          type: string
        maxItems: 10
        type: array
    returning:
      description: Comma-separated list of top-level fields to include in each returned item. Cannot overlap with omit.
      explode: false
      in: query
      name: returning
      schema:
        items:
          type: string
        type: array
    archived.anyOf:
      description: If true, returns archived items. If false, returns unarchived items. If both true and false, returns archived and unarchived items. Comma-separated list.
      explode: false
      in: query
      name: archived.anyOf
      schema:
        items:
          type: boolean
        maxItems: 2
        type: array
    nextToken:
      description: Token for pagination
      in: query
      name: nextToken
      schema:
        type: string
    modifiedAt.gte:
      description: Datetime, in RFC 3339 format. Time zone defaults to UTC. Restricts results to those modified at or after the specified time. e.g. >= 2017-04-30.
      in: query
      name: modifiedAt.gte
      schema:
        format: datetime
        type: string
    createdAt.lte:
      description: Datetime, in RFC 3339 format. Time zone defaults to UTC. Restricts results to those created at or before the specified time. e.g. <= 2017-04-30.
      in: query
      name: createdAt.lte
      schema:
        format: datetime
        type: string
  responses:
    NotFound:
      content:
        application/problem+json:
          schema:
            $ref: '#/components/schemas/GeneralError'
      description: Not Found
    TooManyRequests:
      content:
        application/problem+json:
          schema:
            $ref: '#/components/schemas/GeneralError'
      description: Too Many Requests
    BadRequest:
      content:
        application/problem+json:
          schema:
            $ref: '#/components/schemas/GeneralError'
      description: Bad Request
    Forbidden:
      content:
        application/problem+json:
          schema:
            $ref: '#/components/schemas/GeneralError'
      description: Forbidden
    InternalServerError:
      content:
        application/problem+json:
          schema:
            $ref: '#/components/schemas/InternalServerError'
      description: Internal Server Error
  schemas:
    DataFrameColumn:
      description: 'Defines a column within a DataFrame, including its internal system name, user-facing

        display name, and data type specification.'
      properties:
        __typename:
          type: string
        displayName:
          type: string
        systemName:
          type: string
        type:
          type: object
      type: object
    InternalServerError:
      properties:
        detail:
          type:
          - 'null'
          - string
          - object
        errorId:
          type: string
        instance:
          type: string
        status:
          type: integer
        title:
          type:
          - 'null'
          - string
        type:
          type: string
      required:
      - type
      - title
      - detail
      - status
      - instance
      type: object
    AnalysisTemplateDataFrameVariable:
      description: 'Defines a data frame placeholder within an AnalysisTemplate that users must provide when

        applying the template. Each variable specifies which PipelineStep input (replaceStep,

        replaceStepData, replaceStepDataIndex) will receive the user-provided data frame. The

        replaceDataFrameColumnsSpec field defines the expected column structure that the provided

        data must match. When users apply an analysis template to create an Analysis, they provide

        bindings that map actual data frames to these variables, populating the template''s pipeline

        with real data.'
      properties:
        __typename:
          type: string
        archiveDatetime:
          format: datetime
          type:
          - 'null'
          - string
        archiveReason:
          type:
          - 'null'
          - string
        archiveUser:
          oneOf:
          - $ref: '#/components/schemas/PrincipalRef'
          - type: 'null'
        archived:
          type: boolean
        createdAt:
          format: datetime
          type: string
        description:
          type: string
        id:
          type: string
        modifiedAt:
          format: datetime
          type: string
        name:
          type: string
        replaceDataFrameColumnsSpec:
          items:
            $ref: '#/components/schemas/DataFrameColumn'
          type: array
        replaceStep:
          $ref: '#/components/schemas/PipelineStepRef'
        replaceStepData:
          $ref: '#/components/schemas/PipelineStepDataRef'
        replaceStepDataIndex:
          type: integer
        template:
          $ref: '#/components/schemas/AnalysisTemplateRef'
      type: object
    PipelineStepRef:
      properties:
        __typename:
          type: string
        id:
          format: api_id
          type: string
      type: object
    PrincipalRef:
      properties:
        __typename:
          type: string
        id:
          format: api_id
          type: string
      type: object
    PipelineStepDataRef:
      properties:
        __typename:
          type: string
        id:
          format: api_id
          type: string
      type: object
    AnalysisTemplateRef:
      properties:
        __typename:
          type: string
        id:
          format: api_id
          type: string
      type: object
    AnalysisTemplateDataFrameVariablePaginatedList:
      additionalProperties: false
      properties:
        items:
          items:
            $ref: '#/components/schemas/AnalysisTemplateDataFrameVariable'
          type: array
        nextToken:
          type: string
      type: object
    GeneralError:
      properties:
        detail:
          type:
          - 'null'
          - string
          - object
        instance:
          type: string
        status:
          type: integer
        title:
          type:
          - 'null'
          - string
        type:
          type: string
      required:
      - type
      - title
      - detail
      - status
      - instance
      type: object
  securitySchemes:
    basicApiKeyAuth:
      description: Use issued API key for standard access to the API
      scheme: basic
      type: http
    basicClientIdSecretAuth:
      description: Auth used as part of client credentials OAuth flow prior to receiving a bearer token.
      scheme: basic
      type: http
    oAuth:
      description: OAuth2 Client Credentials flow intended for service access
      flows:
        clientCredentials:
          scopes: {}
          tokenUrl: /oauth/token
      type: oauth2