Benchling

Benchling Molecules API

Molecules are groups of atoms held together by bonds, representing entities smaller than DNA Sequences and AA Sequences. Just like other entities, they support schemas, tags, and aliases.

GitHub OpenAPI
Business capability
Compound & Library Management BC-1500.60

Operations 10

GET /molecules List Molecules #
POST /molecules Create a Molecule #
PATCH /molecules/{entity_registry_id}:upsert Create or update a registered Molecule #
GET /molecules/{molecule_id} Get a Molecule #
PATCH /molecules/{molecule_id} Update a Molecule #
POST /molecules:archive Archive Molecules #
POST /molecules:bulk-create Bulk Create Molecules #
POST /molecules:bulk-update Bulk Update Molecules #
POST /molecules:bulk-upsert Bulk upsert Molecules #
POST /molecules:unarchive Unarchive Molecules #

Documentation

📖
Documentation
https://docs.benchling.com/docs/developer-platform-overview
📖
Authentication
https://docs.benchling.com/docs/getting-started-benchling-apps
📖
RateLimits
https://docs.benchling.com/docs/rate-limiting
📖
RateLimits
https://raw.githubusercontent.com/api-evangelist/benchling/refs/heads/main/rate-limits/benchling-rate-limits.yml

Specifications

⚙
OpenAPI
https://raw.githubusercontent.com/api-evangelist/benchling/refs/heads/main/openapi/benchling-molecules-api-openapi.yml

Other Resources

🔗
Reference
https://benchling.com/api/reference
🔗
Webhooks
https://docs.benchling.com/docs/getting-started-with-webhooks
🔗
WebhookReference
https://benchling.com/webhooks/reference
🔗
Events
https://docs.benchling.com/docs/events-getting-started
🔗
EventsReference
https://docs.benchling.com/docs/events-reference
🔗
SDKs
https://docs.benchling.com/docs/getting-started-with-the-sdk
🔗
SDKPython
https://pypi.org/project/benchling-sdk/
🔗
GitHubOrganization
https://github.com/benchling
🔗
IntegrationExamples
https://github.com/benchling/integration-examples
🔗
AppExamples
https://github.com/benchling/app-examples-python
🔗
ChangeLog
https://docs.benchling.com/changelog
🔗
DeveloperChangelog
https://docs.benchling.com/changelog/benchling-developer-changelog
🔗
Status
https://benchling.betteruptime.com/
🔗
Blog
https://www.benchling.com/blog
🔗
DeveloperPlatform
https://www.benchling.com/developer-platform
🔗
Plans
https://raw.githubusercontent.com/api-evangelist/benchling/refs/heads/main/plans/benchling-plans-pricing.yml
🔗
FinOps
https://raw.githubusercontent.com/api-evangelist/benchling/refs/heads/main/finops/benchling-finops.yml

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OpenAPI Specification

benchling-molecules-api-openapi.yml Raw ↑ 
openapi: 3.2.0
info:
  license:
    name: Apache 2.0
    url: http://www.apache.org/licenses/LICENSE-2.0.html
  title: Benchling Molecules API
  version: 2.0.0
  description: Molecules are groups of atoms held together by bonds, representing entities smaller than DNA Sequences and AA Sequences. Just like other entities, they support schemas, tags, and aliases.
servers:
- url: /api/v2
security:
- oAuth: []
- basicApiKeyAuth: []
tags:


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# Full source: https://raw.githubusercontent.com/api-evangelist/benchling/refs/heads/main/openapi/benchling-molecules-api-openapi.yml