Benchling

Benchling Dna Sequence API

Represents a DNA sequence in Benchling's molecular biology platform. A `DnaSequence` stores the nucleotide bases of the forward strand along with rich annotations for biological features such as genes, promoters, and regulatory elements. Sequences can be linear or circular (controlled by `isCircular`) and support translation annotations for protein-coding regions (see `Translation`), primer binding sites (see `Primer`), and part features linking to other sequences (see `DnaPart`). DNA sequences can be registered in the Registry with a unique `entityRegistryId`, organized in folders, and linked to other entities via schema fields. Also known as "Sequence" in the Benchling interface, with IDs prefixed by 'seq'.

GitHub OpenAPI
Business capability
Research & Development Management BC-810

Operations 14

POST /dna-sequence Create DnaSequence #
GET /dna-sequence/items List DnaSequence items #
GET /dna-sequence/{dna_sequence_id} Get DnaSequence by ID #
PATCH /dna-sequence/{dna_sequence_id} Update DnaSequence #
GET /dna-sequence/{dna_sequence_id}/annotations/items List NucleotideAnnotation items #
GET /dna-sequence/{dna_sequence_id}/authors/items List Principal items #
GET /dna-sequence/{dna_sequence_id}/nucleotide-alignments/items List NucleotideAlignment items #
GET /dna-sequence/{dna_sequence_id}/parts/items List DnaPart items #
GET /dna-sequence/{dna_sequence_id}/primers/items List Primer items #
GET /dna-sequence/{dna_sequence_id}/translations/items List Translation items #
POST /dna-sequence:batch-create Batch create DnaSequence #
PATCH /dna-sequence:batch-update Batch update DnaSequence #
POST /dna-sequence:bulk-create Bulk create DnaSequence #
PATCH /dna-sequence:bulk-update Bulk update DnaSequence #

Documentation

📖
Documentation
https://docs.benchling.com/docs/developer-platform-overview
📖
APIReference
https://benchling.com/api/v3/reference
📖
Authentication
https://artifacts.apis.io/benchling/authentication/benchling-authentication.yml
📖
RateLimits
https://artifacts.apis.io/benchling/rate-limits/benchling-rate-limits.yml

Specifications

⚙
OpenAPI
https://artifacts.apis.io/benchling/openapi/benchling-dnasequence-api-openapi.yml

Other Resources

🔗
OpenAPIRemote
https://benchling.com/api/v3/openapi.yaml
🔗
Conventions
https://artifacts.apis.io/benchling/conventions/benchling-conventions.yml
🔗
ErrorCatalog
https://artifacts.apis.io/benchling/errors/benchling-problem-types.yml
🔗
DataModel
https://artifacts.apis.io/benchling/data-model/benchling-data-model.yml
🔗
Webhooks
https://artifacts.apis.io/benchling/asyncapi/benchling-webhooks.yml
🔗
Lifecycle
https://artifacts.apis.io/benchling/lifecycle/benchling-lifecycle.yml
🔗
ChangeLog
https://artifacts.apis.io/benchling/changelog/benchling-changelog.yml
🔗
StabilityPolicy
https://docs.benchling.com/docs/stability-guidelines
🔗
SDKs
https://artifacts.apis.io/benchling/packages/benchling-packages.yml

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OpenAPI Specification

benchling-dnasequence-api-openapi.yml Raw ↑ 
openapi: 3.2.0
info:
  title: Benchling Dna Sequence API
  version: 2.0.0
  license:
    name: Apache 2.0
    url: http://www.apache.org/licenses/LICENSE-2.0.html
  description: 'Operations tagged DnaSequence across 2 of this provider''s published API definitions: benchling-openapi.yml, benchling-v3-openapi.yaml. Each path carries the servers of the definition it was published in.'
servers:
- url: /api/v3
security:
- oAuth: []
- basicApiKeyAuth: []
tags:


# --- truncated at 32 KB (152 KB total) ---
# Full source: https://artifacts.apis.io/benchling/openapi/benchling-dnasequence-api-openapi.yml