Benchling · Schema

Translation

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Properties

Name Type Description
aminoAcids string
coerceStartCodonToMethionine boolean Whether to override the translation of the start codon to Methionine. Has no effect when the start codon already translates to Methionine.
end integer 0-based exclusive end index. The end of the sequence is always represented as 0.
geneticCode string The genetic code to use when translating the nucleotide sequence into amino acids.
regions array
start integer 0-based inclusive start index.
strand integer
View JSON Schema on GitHub

JSON Schema

Translation.json Raw ↑
{
  "$schema": "https://json-schema.org/draft/2020-12/schema",
  "$id": "https://api-evangelist.github.io/benchling/json-schema/Translation.json",
  "title": "Translation",
  "allOf": [
    {
      "$ref": "#/components/schemas/SequenceFeatureBase"
    },
    {
      "properties": {
        "aminoAcids": {
          "readOnly": true,
          "type": "string"
        },
        "coerceStartCodonToMethionine": {
          "default": false,
          "description": "Whether to override the translation of the start codon to Methionine. Has no effect when the start codon already translates to Methionine.",
          "type": "boolean"
        },
        "end": {
          "description": "0-based exclusive end index. The end of the sequence is always represented as 0.",
          "type": "integer"
        },
        "geneticCode": {
          "default": "STANDARD",
          "description": "The genetic code to use when translating the nucleotide sequence into amino acids.",
          "enum": [
            "STANDARD",
            "VERTEBRATE_MITOCHONDRIAL",
            "YEAST_MITOCHONDRIAL",
            "MOLD_PROTOZOAN_COELENTERATE_MITOCHONDRIAL_MYCOPLASMA_SPIROPLASMA",
            "INVERTEBRATE_MITOCHONDRIAL",
            "CILIATE_DASYCLADACEAN_HEXAMITA_NUCLEAR",
            "ECHINODERM_FLATWORM_MITOCHONDRIAL",
            "EUPLOTID_NUCLEAR",
            "BACTERIAL_ARCHAEAL_PLANT_PLASTID",
            "ALTERNATIVE_YEAST_NUCLEAR",
            "ASCIDIAN_MITOCHONDRIAL",
            "ALTERNATIVE_FLATWORM_MITOCHONDRIAL",
            "CHLOROPHYCEAN_MITOCHONDRIAL",
            "TREMATODE_MITOCHONDRIAL",
            "SCENEDESMUS_OBLIQUUS_MITOCHONDRIAL",
            "THRAUSTOCHYTRIUM_MITOCHONDRIAL",
            "RHABDOPLEURIDAE_MITOCHONDRIAL",
            "CANDIDATE_DIVISION_SR1_GRACILIBACTERIA",
            "PACHYSOLEN_TANNOPHILUS_NUCLEAR",
            "MESODINIUM_NUCLEAR",
            "PERITRICH_NUCLEAR",
            "CEPHALODISCIDAE_MITOCHONDRIAL_UAA_TYR"
          ],
          "type": "string"
        },
        "regions": {
          "items": {
            "properties": {
              "end": {
                "description": "0-based exclusive end index. The end of the sequence is always represented as 0.",
                "type": "integer"
              },
              "start": {
                "description": "0-based inclusive start index.",
                "type": "integer"
              }
            },
            "type": "object"
          },
          "type": "array"
        },
        "start": {
          "description": "0-based inclusive start index.",
          "type": "integer"
        },
        "strand": {
          "example": 1,
          "type": "integer"
        }
      },
      "type": "object"
    }
  ]
}

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