Benchling

Benchling Custom Entities API

Benchling supports custom entities for biological entities that are neither DNA, RNA, nor AA sequences. Custom entities must have an entity schema set and can have both schema fields and custom fields.

GitHub OpenAPI

Operations 11

GET /custom-entities List custom entities #
POST /custom-entities Create a custom entity #
GET /custom-entities/{custom_entity_id} Get a custom entity #
PATCH /custom-entities/{custom_entity_id} Update a custom entity #
PATCH /custom-entities/{entity_registry_id}:upsert Create or update a registered custom entity #
POST /custom-entities:archive Archive custom entities #
POST /custom-entities:bulk-create Bulk Create custom entities #
GET /custom-entities:bulk-get Bulk get custom entities by ID #
POST /custom-entities:bulk-update Bulk Update custom entities #
POST /custom-entities:bulk-upsert Bulk upsert custom entities #
POST /custom-entities:unarchive Unarchive custom entities #

Documentation

📖
Documentation
https://docs.benchling.com/docs/developer-platform-overview
📖
Authentication
https://docs.benchling.com/docs/getting-started-benchling-apps
📖
RateLimits
https://docs.benchling.com/docs/rate-limiting
📖
RateLimits
https://raw.githubusercontent.com/api-evangelist/benchling/refs/heads/main/rate-limits/benchling-rate-limits.yml

Specifications

⚙
OpenAPI
https://raw.githubusercontent.com/api-evangelist/benchling/refs/heads/main/openapi/benchling-custom-entities-api-openapi.yml

Other Resources

🔗
Reference
https://benchling.com/api/reference
🔗
Webhooks
https://docs.benchling.com/docs/getting-started-with-webhooks
🔗
WebhookReference
https://benchling.com/webhooks/reference
🔗
Events
https://docs.benchling.com/docs/events-getting-started
🔗
EventsReference
https://docs.benchling.com/docs/events-reference
🔗
SDKs
https://docs.benchling.com/docs/getting-started-with-the-sdk
🔗
SDKPython
https://pypi.org/project/benchling-sdk/
🔗
GitHubOrganization
https://github.com/benchling
🔗
IntegrationExamples
https://github.com/benchling/integration-examples
🔗
AppExamples
https://github.com/benchling/app-examples-python
🔗
ChangeLog
https://docs.benchling.com/changelog
🔗
DeveloperChangelog
https://docs.benchling.com/changelog/benchling-developer-changelog
🔗
Status
https://benchling.betteruptime.com/
🔗
Blog
https://www.benchling.com/blog
🔗
DeveloperPlatform
https://www.benchling.com/developer-platform
🔗
Plans
https://raw.githubusercontent.com/api-evangelist/benchling/refs/heads/main/plans/benchling-plans-pricing.yml
🔗
FinOps
https://raw.githubusercontent.com/api-evangelist/benchling/refs/heads/main/finops/benchling-finops.yml

Work with this as data

Every API here is available over the APIs.io API and to AI agents over MCP.

MCP server

One button, every client — Claude, Cursor, VS Code and the rest.

https://apis.io/mcp

Tools for apis

7 MCP tools reach this
  • find_apisBrowse and filter every API in the catalog.
  • get_api_artifactsOne API's artifacts, grouped by type.
  • get_openapiThe primary OpenAPI for this API.
  • find_similar_apisAPIs that look like this one.
  • apis_io_searchSTART HERE — APIs, providers and tags for one query, each with its total.
  • resolveTurn a domain, URL or GitHub org into the provider it belongs to.
  • find_cohortsEvery scored population of providers in the catalog.
All 92 tools →

Call it yourself

curl for this page
This API 
curl "https://apis.io/api/v1/apis/benchling-custom-entities-api"
All apis 
curl "https://apis.io/api/v1/apis?limit=25"

Discovery needs no key. Ratings and market analysis are Pro.

Get an API key

Free tier, no form to fill in. Signing in shares your email address with us — we store it to create your key and to recognise you if you sign in with another provider. See our Privacy Policy and Terms.

GitHub Google LinkedIn

A second provider on the same verified email joins the account you already have.

OpenAPI Specification

benchling-custom-entities-api-openapi.yml Raw ↑ 
openapi: 3.2.0
info:
  license:
    name: Apache 2.0
    url: http://www.apache.org/licenses/LICENSE-2.0.html
  title: Benchling Custom Entities API
  version: 2.0.0
  description: Benchling supports custom entities for biological entities that are neither DNA, RNA, nor AA sequences. Custom entities must have an entity schema set and can have both schema fields and custom fields.
servers:
- url: /api/v2
security:
- oAuth: []
- basicApiKeyAuth: []
tags:


# --- truncated at 32 KB (34 KB total) ---
# Full source: https://raw.githubusercontent.com/api-evangelist/benchling/refs/heads/main/openapi/benchling-custom-entities-api-openapi.yml