Benchling

Benchling Nucleotide Alignment API

Represents a multiple sequence alignment of nucleotide sequences (DNA or RNA). Nucleotide alignments are used to compare sequence reads against a reference template for verification (see AlignmentType TEMPLATE) or to align multiple sequences for consensus building (see AlignmentType CONSENSUS). Each alignment contains a referenceSequence (the template or consensus) and a collection of AlignedNucleotideSequence entries representing the individual sequences being compared. Alignments are commonly used in Sanger sequencing verification workflows to confirm that a cloned construct matches the expected design.

GitHub OpenAPI

Operations 9

GET /nucleotide-alignment/items List NucleotideAlignment items #
DELETE /nucleotide-alignment/{nucleotide_alignment_id} Delete NucleotideAlignment #
GET /nucleotide-alignment/{nucleotide_alignment_id} Get NucleotideAlignment by ID #
GET /nucleotide-alignment/{nucleotide_alignment_id}/aligned-nucleotide-sequences/items List AlignedNucleotideSequence items #
POST /nucleotide-alignment:batch-delete Batch delete NucleotideAlignment #
POST /nucleotide-alignment:create-consensus-alignment Create a consensus nucleotide alignment #
POST /nucleotide-alignment:create-template-alignment Create a template nucleotide alignment #
GET /tasks/nucleotide-alignment/create-consensus-alignment/{task_id} Poll async task status #
GET /tasks/nucleotide-alignment/create-template-alignment/{task_id} Poll async task status #

Documentation

📖
Documentation
https://docs.benchling.com/docs/developer-platform-overview
📖
APIReference
https://benchling.com/api/v3/reference
📖
Authentication
https://artifacts.apis.io/benchling/authentication/benchling-authentication.yml
📖
RateLimits
https://artifacts.apis.io/benchling/rate-limits/benchling-rate-limits.yml

Specifications

⚙
OpenAPI
https://artifacts.apis.io/benchling/openapi/benchling-nucleotidealignment-api-openapi.yml

Other Resources

🔗
OpenAPIRemote
https://benchling.com/api/v3/openapi.yaml
🔗
Conventions
https://artifacts.apis.io/benchling/conventions/benchling-conventions.yml
🔗
ErrorCatalog
https://artifacts.apis.io/benchling/errors/benchling-problem-types.yml
🔗
DataModel
https://artifacts.apis.io/benchling/data-model/benchling-data-model.yml
🔗
Webhooks
https://artifacts.apis.io/benchling/asyncapi/benchling-webhooks.yml
🔗
Lifecycle
https://artifacts.apis.io/benchling/lifecycle/benchling-lifecycle.yml
🔗
ChangeLog
https://artifacts.apis.io/benchling/changelog/benchling-changelog.yml
🔗
StabilityPolicy
https://docs.benchling.com/docs/stability-guidelines
🔗
SDKs
https://artifacts.apis.io/benchling/packages/benchling-packages.yml

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OpenAPI Specification

benchling-nucleotidealignment-api-openapi.yml Raw ↑ 
openapi: 3.2.0
info:
  title: Benchling Nucleotide Alignment API
  version: 2.0.0
  license:
    name: Apache 2.0
    url: http://www.apache.org/licenses/LICENSE-2.0.html
  description: 'Operations tagged NucleotideAlignment across 2 of this provider''s published API definitions: benchling-openapi.yml, benchling-v3-openapi.yaml. Each path carries the servers of the definition it was published in.'
servers:
- url: /api/v3
security:
- oAuth: []
- basicApiKeyAuth: []
tags:


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# Full source: https://artifacts.apis.io/benchling/openapi/benchling-nucleotidealignment-api-openapi.yml