MoleculesBulkUpsertRequest

{
  "$schema": "https://json-schema.org/draft/2020-12/schema",
  "$id": "https://raw.githubusercontent.com/api-evangelist/benchling/main/json-schema/benchling-molecules-bulk-upsert-request-schema.json",
  "title": "MoleculesBulkUpsertRequest",
  "x-generated": "2026-10-12",
  "x-method": "derived",
  "x-generator": "derive-json-schema.py",
  "x-source": "openapi/benchling-molecules-api-openapi.yml#/components/schemas/MoleculesBulkUpsertRequest",
  "additionalProperties": false,
  "maxItems": 1000,
  "properties": {
    "molecules": {
      "items": {
        "$ref": "#/$defs/MoleculeBulkUpsertRequest"
      },
      "type": "array"
    }
  },
  "required": [
    "molecules"
  ],
  "type": "object",
  "$defs": {
    "ArchiveRecordSet": {
      "additionalProperties": false,
      "description": "Currently, we only support setting a null value for archiveRecord, which unarchives the item",
      "type": [
        "object",
        "null"
      ]
    },
    "CustomField": {
      "properties": {
        "value": {
          "type": "string"
        }
      },
      "type": "object"
    },
    "CustomFields": {
      "additionalProperties": {
        "$ref": "#/$defs/CustomField"
      },
      "type": "object"
    },
    "EntityBulkUpsertBaseRequest": {
      "allOf": [
        {
          "$ref": "#/$defs/EntityUpsertBaseRequest"
        },
        {
          "properties": {
            "entityRegistryId": {
              "description": "Registry ID of the entity in Benchling.",
              "type": "string"
            }
          }
        },
        {
          "required": [
            "entityRegistryId"
          ]
        }
      ]
    },
    "EntityUpsertBaseRequest": {
      "properties": {
        "archiveRecord": {
          "$ref": "#/$defs/ArchiveRecordSet"
        },
        "fields": {
          "$ref": "#/$defs/FieldsWithResolution"
        },
        "name": {
          "type": "string"
        },
        "registryId": {
          "type": "string"
        },
        "schemaId": {
          "type": "string"
        }
      },
      "required": [
        "registryId",
        "name",
        "schemaId"
      ],
      "type": "object"
    },
    "Field": {
      "properties": {
        "displayValue": {
          "readOnly": true,
          "type": [
            "string",
            "null"
          ]
        },
        "isMulti": {
          "readOnly": true,
          "type": "boolean"
        },
        "textValue": {
          "readOnly": true,
          "type": [
            "string",
            "null"
          ]
        },
        "type": {
          "allOf": [
            {
              "$ref": "#/$defs/FieldType"
            }
          ],
          "readOnly": true
        },
        "value": {
          "description": "For single link fields, use the id of the item you want to link (eg. \"seq_jdf8BV24\").\nFor multi-link fields, use an array of ids of the items you want to link (eg. [\"seq_jdf8BV24\"])\n",
          "oneOf": [
            {
              "type": "string"
            },
            {
              "type": "boolean"
            },
            {
              "type": "number"
            },
            {
              "type": "object"
            },
            {
              "items": {
                "type": "string"
              },
              "type": "array"
            }
          ]
        }
      },
      "required": [
        "value"
      ],
      "type": "object"
    },
    "FieldType": {
      "enum": [
        "dna_sequence_link",
        "aa_sequence_link",
        "custom_entity_link",
        "entity_link",
        "mixture_link",
        "molecule_link",
        "dropdown",
        "part_link",
        "translation_link",
        "aa_part_link",
        "base_molecule_link",
        "blob_link",
        "text",
        "long_text",
        "batch_link",
        "storage_link",
        "entry_link",
        "assay_request_link",
        "assay_result_link",
        "assay_run_link",
        "boolean",
        "float",
        "integer",
        "datetime",
        "date",
        "json"
      ],
      "type": "string"
    },
    "FieldValueWithResolution": {
      "oneOf": [
        {
          "type": "string"
        },
        {
          "type": "boolean"
        },
        {
          "type": "number"
        },
        {
          "items": {
            "type": "string"
          },
          "type": "array"
        },
        {
          "additionalProperties": false,
          "description": "Look up an entity by its entity registry ID",
          "properties": {
            "entityRegistryId": {
              "type": "string"
            }
          },
          "required": [
            "entityRegistryId"
          ],
          "type": "object"
        }
      ]
    },
    "FieldWithResolution": {
      "allOf": [
        {
          "$ref": "#/$defs/Field"
        },
        {
          "properties": {
            "value": {
              "allOf": [
                {
                  "$ref": "#/$defs/FieldValueWithResolution"
                }
              ]
            }
          },
          "type": "object"
        }
      ]
    },
    "Fields": {
      "additionalProperties": {
        "$ref": "#/$defs/Field"
      },
      "type": "object"
    },
    "FieldsWithResolution": {
      "additionalProperties": {
        "$ref": "#/$defs/FieldWithResolution"
      },
      "type": "object"
    },
    "MoleculeBaseRequest": {
      "additionalProperties": false,
      "properties": {
        "aliases": {
          "description": "Aliases to add to the Molecule.",
          "items": {
            "type": "string"
          },
          "type": "array"
        },
        "authorIds": {
          "description": "IDs of users to set as the Molecule's authors.",
          "items": {
            "type": "string"
          },
          "type": "array"
        },
        "chemicalStructure": {
          "allOf": [
            {
              "$ref": "#/$defs/MoleculeStructure"
            }
          ],
          "description": "Chemical structure of the Molecule.\n"
        },
        "customFields": {
          "allOf": [
            {
              "$ref": "#/$defs/CustomFields"
            }
          ],
          "description": "Custom fields to add to the Molecule. Every field should have its name as a key, mapping to an object with information about the value of the field.\n"
        },
        "fields": {
          "allOf": [
            {
              "$ref": "#/$defs/Fields"
            }
          ],
          "description": "Fields to set on the Molecule. Must correspond with the schema's field definitions. Every field should have its name as a key, mapping to an object with information about the value of the field.\n"
        },
        "folderId": {
          "description": "ID of the folder containing the Molecule.\n",
          "type": "string"
        },
        "name": {
          "description": "Name of the Molecule.\n",
          "type": "string"
        },
        "schemaId": {
          "description": "ID of the Molecule's schema.\n",
          "type": "string"
        }
      },
      "type": "object"
    },
    "MoleculeBaseRequestForCreate": {
      "allOf": [
        {
          "$ref": "#/$defs/MoleculeBaseRequest"
        },
        {
          "required": [
            "name",
            "chemicalStructure"
          ]
        }
      ]
    },
    "MoleculeBulkUpsertRequest": {
      "allOf": [
        {
          "$ref": "#/$defs/EntityBulkUpsertBaseRequest"
        },
        {
          "$ref": "#/$defs/MoleculeBaseRequestForCreate"
        }
      ]
    },
    "MoleculeStructure": {
      "additionalProperties": false,
      "properties": {
        "structureFormat": {
          "description": "Format of the chemical structure.\n- smiles\n- molfile\n",
          "enum": [
            "smiles",
            "molfile"
          ],
          "type": "string"
        },
        "value": {
          "description": "Chemical structure in SMILES or molfile format.",
          "type": "string"
        }
      },
      "type": "object"
    }
  }
}