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openapi: 3.2.0
info:
license:
name: Apache 2.0
url: http://www.apache.org/licenses/LICENSE-2.0.html
title: Benchling Study API
version: 2.0.0
description: 'A structured unit used to plan and organize research in Benchling.
Each study progresses through phases (see `StudyPhase`) sequentially from design to execution to completion.
The current phase determines what modifications are permitted on the study and its associated data.'
servers:
- url: /api/v3
security:
- oAuth: []
- basicApiKeyAuth: []
tags:
- description: 'A structured unit used to plan and organize research in Benchling.
Each study progresses through phases (see `StudyPhase`) sequentially from design to execution to completion.
The current phase determines what modifications are permitted on the study and its associated data.'
name: Study
x-bnch-organization: Benchling
paths:
/study:
post:
description: Create a study. If authorIds is omitted, the study authors default to the creator. If authorIds is provided, it must be an array of user or app IDs and replaces the default author list for the new study. Passing an empty array creates the study without authors. Passing null for authorIds is invalid.
operationId: Study.Create
requestBody:
content:
application/json:
schema:
$ref: '#/components/schemas/CreateStudyInput'
responses:
'201':
content:
application/json:
schema:
$ref: '#/components/schemas/Study'
description: Created
'400':
$ref: '#/components/responses/BadRequest'
'403':
$ref: '#/components/responses/Forbidden'
'404':
$ref: '#/components/responses/NotFound'
'429':
$ref: '#/components/responses/TooManyRequests'
'500':
$ref: '#/components/responses/InternalServerError'
summary: Create Study
tags:
- Study
x-bnch-rate-limit-tier: 4
/study/items:
get:
description: List Study items.
operationId: Study.List
parameters:
- $ref: '#/components/parameters/archiveReason.anyOf'
- $ref: '#/components/parameters/archived.anyOf'
- $ref: '#/components/parameters/createdAt.gt'
- $ref: '#/components/parameters/createdAt.gte'
- $ref: '#/components/parameters/createdAt.lt'
- $ref: '#/components/parameters/createdAt.lte'
- $ref: '#/components/parameters/id.anyOf'
- $ref: '#/components/parameters/modifiedAt.gt'
- $ref: '#/components/parameters/modifiedAt.gte'
- $ref: '#/components/parameters/modifiedAt.lt'
- $ref: '#/components/parameters/modifiedAt.lte'
- $ref: '#/components/parameters/name.anyOf'
- $ref: '#/components/parameters/name.anyOf.caseSensitive'
- $ref: '#/components/parameters/nextToken'
- $ref: '#/components/parameters/omit'
- $ref: '#/components/parameters/pageSize'
- $ref: '#/components/parameters/returning'
- description: 'Method by which to order results. Valid sorts are: createdAt (created time, oldest first) and modifiedAt (modified time, oldest first). Use :asc or :desc to specify ascending or descending order. Default is modifiedAt:desc.'
in: query
name: sort
schema:
default: modifiedAt:desc
enum:
- createdAt:asc
- createdAt:desc
- modifiedAt:asc
- modifiedAt:desc
type: string
responses:
'200':
content:
application/json:
schema:
$ref: '#/components/schemas/StudyPaginatedList'
description: OK
headers: {}
'400':
$ref: '#/components/responses/BadRequest'
'403':
$ref: '#/components/responses/Forbidden'
'404':
$ref: '#/components/responses/NotFound'
'429':
$ref: '#/components/responses/TooManyRequests'
'500':
$ref: '#/components/responses/InternalServerError'
summary: List Study items
tags:
- Study
x-bnch-rate-limit-tier: 4
/study/{study_id}:
get:
description: Get a single Study by ID.
operationId: Study.Get
parameters:
- description: ID of the Study.
in: path
name: study_id
required: true
schema:
type: string
- $ref: '#/components/parameters/returning'
- $ref: '#/components/parameters/omit'
responses:
'200':
content:
application/json:
schema:
$ref: '#/components/schemas/Study'
description: OK
headers: {}
'400':
$ref: '#/components/responses/BadRequest'
'403':
$ref: '#/components/responses/Forbidden'
'404':
$ref: '#/components/responses/NotFound'
'429':
$ref: '#/components/responses/TooManyRequests'
'500':
$ref: '#/components/responses/InternalServerError'
summary: Get Study by ID
tags:
- Study
x-bnch-rate-limit-tier: 5
patch:
description: Update a study. If authorIds is omitted, existing study authors are unchanged. If authorIds is provided, it must be an array of user or app IDs and replaces the study's current author list. Passing an empty array clears all authors. Passing null for authorIds is invalid.
operationId: Study.Update
parameters:
- description: ID of the Study.
in: path
name: study_id
required: true
schema:
type: string
requestBody:
content:
application/json:
schema:
$ref: '#/components/schemas/UpdateStudyInput'
responses:
'200':
content:
application/json:
schema:
$ref: '#/components/schemas/Study'
description: OK
'400':
$ref: '#/components/responses/BadRequest'
'403':
$ref: '#/components/responses/Forbidden'
'404':
$ref: '#/components/responses/NotFound'
'429':
$ref: '#/components/responses/TooManyRequests'
'500':
$ref: '#/components/responses/InternalServerError'
summary: Update Study
tags:
- Study
x-bnch-rate-limit-tier: 4
/study/{study_id}/authors/items:
get:
description: List Principal items.
operationId: Study.authors.List
parameters:
- description: ID of the Study.
in: path
name: study_id
required: true
schema:
type: string
- description: Set to true to access beta operations via /api/v3.
in: header
name: EARLY-ACCESS
required: false
schema:
type: string
responses:
'200':
content:
application/json:
schema:
$ref: '#/components/schemas/PrincipalUnpaginatedList'
description: OK
headers: {}
'400':
$ref: '#/components/responses/BadRequest'
'403':
$ref: '#/components/responses/Forbidden'
'404':
$ref: '#/components/responses/NotFound'
'429':
$ref: '#/components/responses/TooManyRequests'
'500':
$ref: '#/components/responses/InternalServerError'
summary: List Principal items
tags:
- Study
x-bnch-rate-limit-tier: 4
/study:batch-create:
post:
description: Batch create Study synchronously in one transaction. Maximum 25 items per request.
operationId: Study.BatchCreate
requestBody:
content:
application/json:
schema:
additionalProperties: false
properties:
items:
items:
$ref: '#/components/schemas/CreateStudyInput'
maxItems: 25
minItems: 1
type: array
required:
- items
type: object
responses:
'201':
content:
application/json:
schema:
additionalProperties: false
properties:
items:
items:
$ref: '#/components/schemas/Study'
type: array
required:
- items
type: object
description: Created
'400':
$ref: '#/components/responses/BadRequest'
'403':
$ref: '#/components/responses/Forbidden'
'404':
$ref: '#/components/responses/NotFound'
'429':
$ref: '#/components/responses/TooManyRequests'
'500':
$ref: '#/components/responses/InternalServerError'
summary: Batch create Study
tags:
- Study
x-bnch-rate-limit-tier: 3
/study:batch-update:
patch:
description: Batch update Study synchronously in one transaction. Maximum 25 items per request.
operationId: Study.BatchUpdate
requestBody:
content:
application/json:
schema:
additionalProperties: false
properties:
items:
items:
$ref: '#/components/schemas/UpdateStudyInputWithPathParams'
maxItems: 25
minItems: 1
type: array
required:
- items
type: object
responses:
'200':
content:
application/json:
schema:
additionalProperties: false
properties:
items:
items:
$ref: '#/components/schemas/Study'
type: array
required:
- items
type: object
description: OK
'400':
$ref: '#/components/responses/BadRequest'
'403':
$ref: '#/components/responses/Forbidden'
'404':
$ref: '#/components/responses/NotFound'
'429':
$ref: '#/components/responses/TooManyRequests'
'500':
$ref: '#/components/responses/InternalServerError'
summary: Batch update Study
tags:
- Study
x-bnch-rate-limit-tier: 3
/study:bulk-create:
post:
description: Bulk create Study.
operationId: Study.BulkCreate
requestBody:
content:
application/json:
schema:
$ref: '#/components/schemas/BulkImport'
responses:
'202':
content:
application/json:
schema:
$ref: '#/components/schemas/AsyncTaskLink'
description: Task started
'400':
$ref: '#/components/responses/BadRequest'
'403':
$ref: '#/components/responses/Forbidden'
'404':
$ref: '#/components/responses/NotFound'
'429':
$ref: '#/components/responses/TooManyRequests'
'500':
$ref: '#/components/responses/InternalServerError'
summary: Bulk create Study
tags:
- Study
x-bnch-rate-limit-tier: 2
/study:bulk-update:
patch:
description: Bulk update Study.
operationId: Study.BulkUpdate
requestBody:
content:
application/json:
schema:
$ref: '#/components/schemas/BulkImport'
responses:
'202':
content:
application/json:
schema:
$ref: '#/components/schemas/AsyncTaskLink'
description: Task started
'400':
$ref: '#/components/responses/BadRequest'
'403':
$ref: '#/components/responses/Forbidden'
'404':
$ref: '#/components/responses/NotFound'
'429':
$ref: '#/components/responses/TooManyRequests'
'500':
$ref: '#/components/responses/InternalServerError'
summary: Bulk update Study
tags:
- Study
x-bnch-rate-limit-tier: 2
components:
schemas:
UpdateStudyInput:
additionalProperties: false
example:
archiveReason: Archived
archived: true
authorIds:
- ent_a0SApq3z
- ent_t40Vb4aA
description: Updated Study Description
displayId: CSWNAR1
folderId: lib_o2thOLlq
name: Updated Study Name
phase: EXECUTION
schemaFields:
boolean_field_system_name:
value: false
date_field_system_name:
value: '2025-06-15'
datetime_field_system_name:
value: '2025-06-15T09:00:00Z'
dropdown_field_system_name:
value: sfso_UcQuhAwx
entity_field_system_name:
value:
- bfi_jdf8BV24
number_field_system_name:
value: 456
text_field_system_name:
value: Updated text value
properties:
archiveReason:
type: string
archived:
type: boolean
authorIds:
description: The IDs of the users or apps to set as study authors. Omit to leave authors unchanged. Pass an empty array to clear all authors.
items:
type: string
type: array
description:
type: string
displayId:
type: string
fieldValues:
deprecated: true
description: Use schemaFields instead.
items:
$ref: '#/components/schemas/UpdateFieldValueInput'
type: array
folderId:
type: string
name:
type: string
phase:
enum:
- DESIGN
- EXECUTION
- COMPLETE
type: string
schemaFields:
additionalProperties:
$ref: '#/components/schemas/FieldValueInput'
type: object
type: object
AppInstallation:
description: 'Represents an installed Benchling App on a tenant, created from an `AppDefinitionVersion`.
App installations store tenant-specific configuration values and feature bindings. As a
Principal, app installations can be attributed as actors for API operations and auditing.'
properties:
__typename:
type: string
archiveReason:
type:
- 'null'
- string
archived:
type: boolean
configurationValues:
format: uri
type: string
createdAt:
format: datetime
type:
- 'null'
- string
creator:
oneOf:
- $ref: '#/components/schemas/PrincipalRef'
- type: 'null'
featureValues:
items:
$ref: '#/components/schemas/AssayRunFeatureValue'
type: array
id:
type: string
modifiedAt:
format: datetime
type:
- 'null'
- string
name:
type: string
type: object
User:
description: 'Represents a human user in Benchling who can log in, perform actions, and own data.
Users belong to one or more Organizations and may be members of Teams within those
organizations. As an Owner, users can own Projects, Folders, and other resources.
As a Principal, users can be assigned as reviewers, authors, or collaborators on
various items. Users have attributes like email and username for identification.
Users are distinct from `ServicePrincipal`, which represents non-human service
accounts used for integrations.'
properties:
__typename:
type: string
createdAt:
format: datetime
type: string
email:
type: string
id:
type: string
lastSeen:
format: datetime
type:
- 'null'
- string
modifiedAt:
format: datetime
type: string
name:
type:
- 'null'
- string
status:
enum:
- ACTIVE
- SUSPENDED
type: string
username:
type: string
type: object
SchemaFieldValue:
description: 'Represents a field value on a schematized object, pairing a `fieldDefinition` (describing the
field''s type and constraints) with its actual `value` (a `BenchlingValue` such as text, number,
date, or link to another object). The value may be null if no value has been set. Used within
the `schemaFields` collection on objects that implement `HasSchema` to provide access to all
custom field values defined by the object''s schema.'
properties:
__typename:
type: string
fieldDefinition:
$ref: '#/components/schemas/SchemaFieldDefinitionRef'
id:
type: string
linkedEntityId:
type:
- 'null'
- string
value:
description: Union of BooleanValue, DateTimeValue, DateValue, DecimalValue, IntegerValue, JsonValue, ObjectLinkValue, ObjectLinkListValue, TextAndUrlValue, TextValue, ArrayValue
oneOf:
- anyOf:
- $ref: '#/components/schemas/BooleanValue'
- $ref: '#/components/schemas/DateTimeValue'
- $ref: '#/components/schemas/DateValue'
- $ref: '#/components/schemas/DecimalValue'
- $ref: '#/components/schemas/IntegerValue'
- $ref: '#/components/schemas/JsonValue'
- $ref: '#/components/schemas/ObjectLinkValue'
- $ref: '#/components/schemas/ObjectLinkListValue'
- $ref: '#/components/schemas/TextAndUrlValue'
- $ref: '#/components/schemas/TextValue'
- $ref: '#/components/schemas/ArrayValue'
discriminator:
propertyName: __typename
- type: 'null'
type: object
AppConfigWorkflowTaskSchemaOutput:
description: Defines the output field structure for a workflow task schema configuration.
properties:
__typename:
type: string
fieldDefinitions:
oneOf:
- items:
$ref: '#/components/schemas/AppConfigFieldDefinition'
type: array
- type: 'null'
type: object
ResourceAppConfigSpec:
description: 'Specifies that an app configuration field should reference a Benchling object instance.
The type field identifies the kind of object required, matching the BenchlingAppType
values used in app manifests (e.g. dna_sequence, folder, registry). Covers all instance
reference types with no additional spec constraints beyond requiredConfig. For schema
references use SchemaAppConfigSpec or EntitySchemaAppConfigSpec.'
properties:
__typename:
type: string
requiredConfig:
type:
- 'null'
- boolean
type:
enum:
- BOX_SCHEMA
- CONTAINER_SCHEMA
- ENTRY_SCHEMA
- LEGACY_REQUEST_SCHEMA
- LOCATION_SCHEMA
- PLATE_SCHEMA
- RESULT_SCHEMA
- RUN_SCHEMA
- WORKFLOW_TASK_SCHEMA
- AA_SEQUENCE
- ASSAY_RESULT
- ASSAY_RUN
- AUTOMATION_INPUT_GENERATOR
- AUTOMATION_OUTPUT_PROCESSOR
- BLOB
- BOX
- CONTAINER
- CUSTOM_ENTITY
- DNA_ALIGNMENT
- DNA_OLIGO
- DNA_SEQUENCE
- DROPDOWN
- DROPDOWN_OPTION
- ENTRY
- FIELD
- FOLDER
- LEGACY_REQUEST
- LOCATION
- MIXTURE
- MOLECULE
- PLATE
- PROJECT
- REGISTRY
- RNA_OLIGO
- RNA_SEQUENCE
- WORKFLOW_TASK_STATUS
- WORKLIST
- null
type:
- 'null'
- string
type: object
DateTimeValue:
description: A type that represents datetime values.
properties:
__typename:
type: string
value:
description: The datetime value with UTC as the timezone.
format: datetime
type: string
type: object
FolderRef:
properties:
__typename:
type: string
id:
format: api_id
type: string
type: object
FloatAppConfigSpec:
description: Specifies that an app configuration field should accept a floating-point number.
properties:
__typename:
type: string
enum:
description: Optional enum constraint — if present, the value must be one of these floats.
oneOf:
- items:
type: number
type: array
- type: 'null'
requiredConfig:
type:
- 'null'
- boolean
type: object
WorkflowTaskSchemaAppConfigSpec:
description: 'Specifies that an app configuration field should reference a workflow task schema.
Kept separate from SchemaAppConfigSpec because it supports output field definitions.'
properties:
__typename:
type: string
fieldDefinitions:
oneOf:
- items:
$ref: '#/components/schemas/AppConfigFieldDefinition'
type: array
- type: 'null'
output:
description: Output field definitions for the workflow task schema.
oneOf:
- $ref: '#/components/schemas/AppConfigWorkflowTaskSchemaOutput'
- type: 'null'
requiredConfig:
type:
- 'null'
- boolean
type: object
EntitySchemaAppConfigSpec:
description: 'Specifies that an app configuration field should reference an entity schema.
Kept separate from SchemaAppConfigSpec because it carries a subtype constraint.'
properties:
__typename:
type: string
fieldDefinitions:
oneOf:
- items:
$ref: '#/components/schemas/AppConfigFieldDefinition'
type: array
- type: 'null'
requiredConfig:
type:
- 'null'
- boolean
subtype:
description: 'Optional subtype constraint — if present, the referenced schema must be of this
entity type (e.g. DNA_SEQUENCE, AA_SEQUENCE).'
enum:
- AA_SEQUENCE
- CUSTOM_ENTITY
- DNA_OLIGO
- DNA_SEQUENCE
- MIXTURE
- MOLECULE
- RNA_OLIGO
- RNA_SEQUENCE
- null
type:
- 'null'
- string
type: object
AppConfigFieldDefinition:
description: 'Defines a field within an app configuration that references schema fields. Specifies the
field name, type, whether it accepts multiple values, and whether it is required.'
properties:
__typename:
type: string
description:
type:
- 'null'
- string
isMulti:
description: Whether the field must be multi-valued — null means either true or false is acceptable.
type:
- 'null'
- boolean
isRequired:
description: Whether the field must be required — null means either true or false is acceptable.
type:
- 'null'
- boolean
name:
type: string
requiredConfig:
type:
- 'null'
- boolean
type:
description: Type constraint for the field — null means any type is acceptable.
enum:
- DNA_SEQUENCE_LINK
- AA_SEQUENCE_LINK
- CUSTOM_ENTITY_LINK
- ENTITY_LINK
- MIXTURE_LINK
- MOLECULE_LINK
- DROPDOWN
- PART_LINK
- AA_PART_LINK
- TRANSLATION_LINK
- BLOB_LINK
- TEXT
- LONG_TEXT
- BATCH_LINK
- STORAGE_LINK
- ENTRY_LINK
- ASSAY_REQUEST_LINK
- ASSAY_RESULT_LINK
- ASSAY_RUN_LINK
- BOOLEAN
- FLOAT
- INTEGER
- DATETIME
- DATE
- JSON
- null
type:
- 'null'
- string
type: object
JsonValue:
description: A type that represents JSON values.
properties:
__typename:
type: string
value:
description: The JSON value.
type: object
type: object
TextAndUrlValue:
description: A type that represents text (string) values with an associated URL.
properties:
__typename:
type: string
url:
description: The URL associated with the value. Please use `TextValue` if you don't want a URL.
type: string
value:
description: The text value. It may or may not be an empty string.
type: string
type: object
SchemaAppConfigSpec:
description: 'Specifies that an app configuration field should reference one of the schema types
that share a common structure: container_schema, plate_schema, location_schema,
box_schema, run_schema, result_schema, legacy_request_schema, or entry_schema.
The type field identifies which schema kind is required. For entity_schema use
EntitySchemaAppConfigSpec; for workflow_task_schema use WorkflowTaskSchemaAppConfigSpec.'
properties:
__typename:
type: string
fieldDefinitions:
oneOf:
- items:
$ref: '#/components/schemas/AppConfigFieldDefinition'
type: array
- type: 'null'
requiredConfig:
type:
- 'null'
- boolean
type:
enum:
- BOX_SCHEMA
- CONTAINER_SCHEMA
- ENTRY_SCHEMA
- LEGACY_REQUEST_SCHEMA
- LOCATION_SCHEMA
- PLATE_SCHEMA
- RESULT_SCHEMA
- RUN_SCHEMA
- WORKFLOW_TASK_SCHEMA
- AA_SEQUENCE
- ASSAY_RESULT
- ASSAY_RUN
- AUTOMATION_INPUT_GENERATOR
- AUTOMATION_OUTPUT_PROCESSOR
- BLOB
- BOX
- CONTAINER
- CUSTOM_ENTITY
- DNA_ALIGNMENT
- DNA_OLIGO
- DNA_SEQUENCE
- DROPDOWN
- DROPDOWN_OPTION
- ENTRY
- FIELD
- FOLDER
- LEGACY_REQUEST
- LOCATION
- MIXTURE
- MOLECULE
- PLATE
- PROJECT
- REGISTRY
- RNA_OLIGO
- RNA_SEQUENCE
- WORKFLOW_TASK_STATUS
- WORKLIST
- null
type:
- 'null'
- string
type: object
JsonAppConfigSpec:
description: Specifies that an app configuration field should accept a JSON value.
properties:
__typename:
type: string
requiredConfig:
type:
- 'null'
- boolean
type: object
AnyType: {}
CanvasFeatureSpec:
description: 'Defines a canvas feature for a Benchling App, which provides an embedded UI surface within
entries or templates. Canvases allow apps to render custom interactive content.'
properties:
__typename:
type: string
featureId:
type: string
locations:
oneOf:
- items:
enum:
- ENTRY
- ENTRY_TEMPLATE
- APP_HOME
type: string
type: array
- type: 'null'
name:
type: string
type: object
ObjectLinkValue:
description: A type that represents links to other objects.
properties:
__typename:
type: string
value:
$ref: '#/components/schemas/ObjectRef'
description: The object that this value links to, or an Inaccessible object if not found with the current permission set.
type: object
InternalServerError:
properties:
detail:
type:
- 'null'
- string
- object
errorId:
type: string
instance:
type: string
status:
type: integer
title:
type:
- 'null'
- string
type:
type: string
required:
- type
- title
- detail
- status
- instance
type: object
DecimalValue:
description: A type that represents decimal value as strings.
properties:
__typename:
type: string
numericValue:
deprecated: true
description: Deprecated. The float representation of the decimal value.
type:
- 'null'
- number
value:
description: The decimal value in a string representation
type:
- 'null'
- string
type: object
BooleanAppConfigSpec:
description: Specifies that an app configuration field should accept a boolean value.
properties:
__typename:
type: string
requiredConfig:
type:
- 'null'
- boolean
type: object
PrincipalRef:
properties:
__typename:
type: string
id:
format: api_id
type: string
type: object
TextAppConfigSpec:
description: Specifies that an app configuration field should accept a text string.
properties:
__typename:
type: string
enum:
description: Optional enum constraint — if present, the value must be one of these strings.
oneOf:
- items:
type: string
type: array
- type: 'null'
requiredConfig:
type:
- 'null'
- boolean
type: object
UpdateStudyInputWithPathParams:
additionalProperties: false
example:
archiveReason: Archived
archived: true
authorIds:
- ent_a0SApq3z
- ent_t40Vb4aA
description: Updated Study Description
displayId: CSWNAR1
folderId: lib_o2thOLlq
id: stdy_9CYiCggY
name: Updated Study Name
phase: EXECUTION
schemaFields:
boolean_field_system_name:
value: false
date_field_system_name:
value: '2025-06-15'
datetime_field_system_name:
value: '2025-06-15T09:00:00Z'
dropdown_field_system_name:
value: sfso_UcQuhAwx
entity_field_system_name:
value:
- bfi_jdf8BV24
number_field_system_name:
value: 456
text_field_system_name:
value: Updated text value
properties:
archiveReason:
type: string
archived:
type: boolean
authorIds:
description: The IDs of the users or apps to set as study authors. Omit to leave authors unchanged. Pass an empty array to clear all authors.
items:
type: string
type: array
description:
type: string
displayId:
type: string
fieldValues:
deprecated: true
description: Use schemaFields instead.
items:
$ref: '#/components/schemas/UpdateFieldValueInput'
type: array
folderId:
type: string
id:
type: string
name:
type: string
phase:
enum:
- DESIGN
- EXECUTION
- COMPLETE
type: string
schemaFields:
additionalProperties:
$ref: '#/components/schemas/FieldValueInput'
type: object
required:
- id
type: object
SchemaFieldDefinitionRef:
properties:
__typename:
type: string
id:
format: api_id
type: string
type: object
CreateStudyInput:
additionalProperties: false
example:
authorIds:
- ent_a0SApq3z
description: Study Description
designEntryId: etr_kT6BHBdZ
displayId: STUDY-001
folderId: lib_o2thOLlq
name: Study Name
schemaFields:
boolean_field_system_name:
value: true
date_
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# Full source: https://raw.githubusercontent.com/api-evangelist/benchling/refs/heads/main/openapi/benchling-study-api-openapi.yml