Benchling Prediction Batch API

openapi: 3.2.0
info:
  license:
    name: Apache 2.0
    url: http://www.apache.org/licenses/LICENSE-2.0.html
  title: Benchling Prediction Batch API
  version: 2.0.0
  description: 'Represents an execution of a Model Hub model against multiple data inputs (resulting in multiple Predictions).

    A PredictionBatch tracks the input configuration, execution status, and results.

    Each batch is associated with a specific model and version, enabling version tracking.

    Common use cases include protein structure prediction, property prediction, and sequence generation.'
servers:
- url: /api/v3
security:
- oAuth: []
- basicApiKeyAuth: []
tags:
- description: 'Represents an execution of a Model Hub model against multiple data inputs (resulting in multiple Predictions).

    A PredictionBatch tracks the input configuration, execution status, and results.

    Each batch is associated with a specific model and version, enabling version tracking.

    Common use cases include protein structure prediction, property prediction, and sequence generation.'
  name: PredictionBatch
  x-bnch-organization: Benchling
paths:
  /prediction-batch:
    post:
      description: Create PredictionBatch.
      operationId: PredictionBatch.Create
      parameters:
      - description: Set to true to access beta operations via /api/v3.
        in: header
        name: EARLY-ACCESS
        required: false
        schema:
          type: string
      requestBody:
        content:
          application/json:
            schema:
              $ref: '#/components/schemas/PredictionBatchInput'
      responses:
        '201':
          content:
            application/json:
              schema:
                $ref: '#/components/schemas/PredictionBatch'
          description: Created
        '400':
          $ref: '#/components/responses/BadRequest'
        '403':
          $ref: '#/components/responses/Forbidden'
        '404':
          $ref: '#/components/responses/NotFound'
        '429':
          $ref: '#/components/responses/TooManyRequests'
        '500':
          $ref: '#/components/responses/InternalServerError'
      summary: Create PredictionBatch
      tags:
      - PredictionBatch
      x-bnch-rate-limit-tier: 4
  /prediction-batch/items:
    get:
      description: List PredictionBatch items.
      operationId: PredictionBatch.List
      parameters:
      - $ref: '#/components/parameters/archiveReason.anyOf'
      - $ref: '#/components/parameters/archived.anyOf'
      - $ref: '#/components/parameters/createdAt.gt'
      - $ref: '#/components/parameters/createdAt.gte'
      - $ref: '#/components/parameters/createdAt.lt'
      - $ref: '#/components/parameters/createdAt.lte'
      - $ref: '#/components/parameters/creator.anyOf'
      - $ref: '#/components/parameters/id.anyOf'
      - $ref: '#/components/parameters/model.anyOf'
      - $ref: '#/components/parameters/modifiedAt.gt'
      - $ref: '#/components/parameters/modifiedAt.gte'
      - $ref: '#/components/parameters/modifiedAt.lt'
      - $ref: '#/components/parameters/modifiedAt.lte'
      - $ref: '#/components/parameters/nextToken'
      - $ref: '#/components/parameters/omit'
      - $ref: '#/components/parameters/pageSize'
      - $ref: '#/components/parameters/returning'
      - description: 'Method by which to order results. Valid sorts are: createdAt (created time, oldest first) and modifiedAt (modified time, oldest first). Use :asc or :desc to specify ascending or descending order. Default is modifiedAt:desc.'
        in: query
        name: sort
        schema:
          default: modifiedAt:desc
          enum:
          - createdAt:asc
          - createdAt:desc
          - modifiedAt:asc
          - modifiedAt:desc
          type: string
      - description: Set to true to access beta operations via /api/v3.
        in: header
        name: EARLY-ACCESS
        required: false
        schema:
          type: string
      responses:
        '200':
          content:
            application/json:
              schema:
                $ref: '#/components/schemas/PredictionBatchPaginatedList'
          description: OK
          headers: {}
        '400':
          $ref: '#/components/responses/BadRequest'
        '403':
          $ref: '#/components/responses/Forbidden'
        '404':
          $ref: '#/components/responses/NotFound'
        '429':
          $ref: '#/components/responses/TooManyRequests'
        '500':
          $ref: '#/components/responses/InternalServerError'
      summary: List PredictionBatch items
      tags:
      - PredictionBatch
      x-bnch-rate-limit-tier: 4
  /prediction-batch/{prediction_batch_id}:
    get:
      description: Get a single PredictionBatch by ID.
      operationId: PredictionBatch.Get
      parameters:
      - description: ID of the PredictionBatch.
        in: path
        name: prediction_batch_id
        required: true
        schema:
          type: string
      - $ref: '#/components/parameters/returning'
      - $ref: '#/components/parameters/omit'
      - description: Set to true to access beta operations via /api/v3.
        in: header
        name: EARLY-ACCESS
        required: false
        schema:
          type: string
      responses:
        '200':
          content:
            application/json:
              schema:
                $ref: '#/components/schemas/PredictionBatch'
          description: OK
          headers: {}
        '400':
          $ref: '#/components/responses/BadRequest'
        '403':
          $ref: '#/components/responses/Forbidden'
        '404':
          $ref: '#/components/responses/NotFound'
        '429':
          $ref: '#/components/responses/TooManyRequests'
        '500':
          $ref: '#/components/responses/InternalServerError'
      summary: Get PredictionBatch by ID
      tags:
      - PredictionBatch
      x-bnch-rate-limit-tier: 5
  /prediction-batch/{prediction_batch_id}/prediction-jobs/items:
    get:
      description: List PredictionJob items.
      operationId: PredictionBatch.predictionJobs.List
      parameters:
      - $ref: '#/components/parameters/nextToken'
      - $ref: '#/components/parameters/pageSize'
      - description: ID of the PredictionBatch.
        in: path
        name: prediction_batch_id
        required: true
        schema:
          type: string
      - description: Set to true to access beta operations via /api/v3.
        in: header
        name: EARLY-ACCESS
        required: false
        schema:
          type: string
      responses:
        '200':
          content:
            application/json:
              schema:
                $ref: '#/components/schemas/PredictionJobPaginatedList'
          description: OK
          headers: {}
        '400':
          $ref: '#/components/responses/BadRequest'
        '403':
          $ref: '#/components/responses/Forbidden'
        '404':
          $ref: '#/components/responses/NotFound'
        '429':
          $ref: '#/components/responses/TooManyRequests'
        '500':
          $ref: '#/components/responses/InternalServerError'
      summary: List PredictionJob items
      tags:
      - PredictionBatch
      x-bnch-rate-limit-tier: 4
  /prediction-batch:batch-create:
    post:
      description: Batch create PredictionBatch synchronously in one transaction. Maximum 25 items per request.
      operationId: PredictionBatch.BatchCreate
      parameters:
      - description: Set to true to access beta operations via /api/v3.
        in: header
        name: EARLY-ACCESS
        required: false
        schema:
          type: string
      requestBody:
        content:
          application/json:
            schema:
              additionalProperties: false
              properties:
                items:
                  items:
                    $ref: '#/components/schemas/PredictionBatchInput'
                  maxItems: 25
                  minItems: 1
                  type: array
              required:
              - items
              type: object
      responses:
        '201':
          content:
            application/json:
              schema:
                additionalProperties: false
                properties:
                  items:
                    items:
                      $ref: '#/components/schemas/PredictionBatch'
                    type: array
                required:
                - items
                type: object
          description: Created
        '400':
          $ref: '#/components/responses/BadRequest'
        '403':
          $ref: '#/components/responses/Forbidden'
        '404':
          $ref: '#/components/responses/NotFound'
        '429':
          $ref: '#/components/responses/TooManyRequests'
        '500':
          $ref: '#/components/responses/InternalServerError'
      summary: Batch create PredictionBatch
      tags:
      - PredictionBatch
      x-bnch-rate-limit-tier: 3
  /prediction-batch:bulk-create:
    post:
      description: Bulk create PredictionBatch.
      operationId: PredictionBatch.BulkCreate
      parameters:
      - description: Set to true to access beta operations via /api/v3.
        in: header
        name: EARLY-ACCESS
        required: false
        schema:
          type: string
      requestBody:
        content:
          application/json:
            schema:
              $ref: '#/components/schemas/BulkImport'
      responses:
        '202':
          content:
            application/json:
              schema:
                $ref: '#/components/schemas/AsyncTaskLink'
          description: Task started
        '400':
          $ref: '#/components/responses/BadRequest'
        '403':
          $ref: '#/components/responses/Forbidden'
        '404':
          $ref: '#/components/responses/NotFound'
        '429':
          $ref: '#/components/responses/TooManyRequests'
        '500':
          $ref: '#/components/responses/InternalServerError'
      summary: Bulk create PredictionBatch
      tags:
      - PredictionBatch
      x-bnch-rate-limit-tier: 2
components:
  parameters:
    model.anyOf:
      description: Restricts results to prediction batches using any of the specified model names. Comma-separated list.
      explode: false
      in: query
      name: model.anyOf
      schema:
        items:
          type: string
        maxItems: 100
        type: array
    pageSize:
      description: Number of results to return. Defaults to 50, maximum of 100.
      in: query
      name: pageSize
      schema:
        type: integer
    createdAt.gte:
      description: Datetime, in RFC 3339 format. Time zone defaults to UTC. Restricts results to those created at or after the specified time. e.g. >= 2017-04-30.
      in: query
      name: createdAt.gte
      schema:
        format: datetime
        type: string
    modifiedAt.gt:
      description: Datetime, in RFC 3339 format. Time zone defaults to UTC. Restricts results to those modified after the specified time. e.g. > 2017-04-30.
      in: query
      name: modifiedAt.gt
      schema:
        format: datetime
        type: string
    modifiedAt.lte:
      description: Datetime, in RFC 3339 format. Time zone defaults to UTC. Restricts results to those modified at or before the specified time. e.g. <= 2017-04-30.
      in: query
      name: modifiedAt.lte
      schema:
        format: datetime
        type: string
    id.anyOf:
      description: Restricts results to those matching any of the specified IDs. Comma-separated list.
      explode: false
      in: query
      name: id.anyOf
      schema:
        items:
          type: string
        maxItems: 100
        type: array
    omit:
      description: Comma-separated list of top-level fields to omit from each returned item. Cannot overlap with returning.
      explode: false
      in: query
      name: omit
      schema:
        items:
          type: string
        type: array
    modifiedAt.lt:
      description: Datetime, in RFC 3339 format. Time zone defaults to UTC. Restricts results to those modified before the specified time. e.g. < 2017-04-30.
      in: query
      name: modifiedAt.lt
      schema:
        format: datetime
        type: string
    creator.anyOf:
      description: Restricts results to those created by any of the specified user IDs. Comma-separated list.
      explode: false
      in: query
      name: creator.anyOf
      schema:
        items:
          type: string
        maxItems: 100
        type: array
    createdAt.gt:
      description: Datetime, in RFC 3339 format. Time zone defaults to UTC. Restricts results to those created after the specified time. e.g. > 2017-04-30.
      in: query
      name: createdAt.gt
      schema:
        format: datetime
        type: string
    createdAt.lt:
      description: Datetime, in RFC 3339 format. Time zone defaults to UTC. Restricts results to those created before the specified time. e.g. < 2017-04-30.
      in: query
      name: createdAt.lt
      schema:
        format: datetime
        type: string
    archiveReason.anyOf:
      description: Restricts items to those with any of the specified archive reasons. Use "NOT_ARCHIVED" to filter for unarchived items. Use "ANY_ARCHIVED" to filter for archived items regardless of reason. Use "ANY_ARCHIVED_OR_NOT_ARCHIVED" to return items for both archived and unarchived. Comma-separated list.
      explode: false
      in: query
      name: archiveReason.anyOf
      schema:
        items:
          type: string
        maxItems: 10
        type: array
    returning:
      description: Comma-separated list of top-level fields to include in each returned item. Cannot overlap with omit.
      explode: false
      in: query
      name: returning
      schema:
        items:
          type: string
        type: array
    archived.anyOf:
      description: If true, returns archived items. If false, returns unarchived items. If both true and false, returns archived and unarchived items. Comma-separated list.
      explode: false
      in: query
      name: archived.anyOf
      schema:
        items:
          type: boolean
        maxItems: 2
        type: array
    nextToken:
      description: Token for pagination
      in: query
      name: nextToken
      schema:
        type: string
    modifiedAt.gte:
      description: Datetime, in RFC 3339 format. Time zone defaults to UTC. Restricts results to those modified at or after the specified time. e.g. >= 2017-04-30.
      in: query
      name: modifiedAt.gte
      schema:
        format: datetime
        type: string
    createdAt.lte:
      description: Datetime, in RFC 3339 format. Time zone defaults to UTC. Restricts results to those created at or before the specified time. e.g. <= 2017-04-30.
      in: query
      name: createdAt.lte
      schema:
        format: datetime
        type: string
  schemas:
    PredictionJobPaginatedList:
      additionalProperties: false
      properties:
        items:
          items:
            $ref: '#/components/schemas/PredictionJob'
          type: array
        nextToken:
          type: string
      type: object
    PredictionBatchPaginatedList:
      additionalProperties: false
      properties:
        items:
          items:
            $ref: '#/components/schemas/PredictionBatch'
          type: array
        nextToken:
          type: string
      type: object
    PredictionBatchInput:
      additionalProperties: false
      properties:
        configSchemaVersion:
          type:
          - 'null'
          - integer
        folderId:
          type: string
        jobConfigs:
          items:
            $ref: '#/components/schemas/PredictionBatchJobConfigInput'
          type: array
        model:
          type: string
        modelImplementationVersion:
          type:
          - 'null'
          - string
        name:
          type: string
      required:
      - folderId
      - model
      - name
      - jobConfigs
      type: object
    PredictionJob:
      description: 'Represents a single prediction within a PredictionBatch.

        Each PredictionJob captures the input configuration for one prediction

        and its association with input components (e.g., AA sequences, molecules).'
      properties:
        __typename:
          type: string
        createdAt:
          format: datetime
          type: string
        id:
          type: string
        input:
          type: object
        modifiedAt:
          format: datetime
          type: string
        predictedStructureUrl:
          type:
          - 'null'
          - string
        predictionBatch:
          $ref: '#/components/schemas/PredictionBatchRef'
        properties:
          type:
          - 'null'
          - object
        resultsDownloadUrl:
          type:
          - 'null'
          - string
        status:
          enum:
          - AI_PROPOSED
          - BLOCKED
          - FAILED
          - HALTED
          - RUNNING
          - SUCCEEDED
          - WAITING
          type: string
      type: object
    InternalServerError:
      properties:
        detail:
          type:
          - 'null'
          - string
          - object
        errorId:
          type: string
        instance:
          type: string
        status:
          type: integer
        title:
          type:
          - 'null'
          - string
        type:
          type: string
      required:
      - type
      - title
      - detail
      - status
      - instance
      type: object
    AsyncTaskLink:
      properties:
        pollingUri:
          format: uri
          type: string
        taskId:
          type: string
      type: object
    BulkImport:
      example:
        fileId: scrfile_jdf8BV24kLmN
      properties:
        fileId:
          description: The API ID of the scratch file (`scrfile_XXXXXXXX`) containing the items to import. The referenced file must be a scratch file whose upload has completed successfully.
          type: string
      required:
      - fileId
      type: object
    PredictionBatchJobConfigInput:
      additionalProperties: false
      properties:
        config:
          type: object
        name:
          type:
          - 'null'
          - string
      required:
      - config
      type: object
    PrincipalRef:
      properties:
        __typename:
          type: string
        id:
          format: api_id
          type: string
      type: object
    FolderRef:
      properties:
        __typename:
          type: string
        id:
          format: api_id
          type: string
      type: object
    PredictionBatchRef:
      properties:
        __typename:
          type: string
        id:
          format: api_id
          type: string
      type: object
    PredictionBatch:
      description: 'Represents an execution of a Model Hub model against multiple data inputs (resulting in multiple Predictions).

        A PredictionBatch tracks the input configuration, execution status, and results.

        Each batch is associated with a specific model and version, enabling version tracking.

        Common use cases include protein structure prediction, property prediction, and sequence generation.'
      properties:
        __typename:
          type: string
        archiveDatetime:
          format: datetime
          type:
          - 'null'
          - string
        archiveReason:
          type:
          - 'null'
          - string
        archiveUser:
          oneOf:
          - $ref: '#/components/schemas/PrincipalRef'
          - type: 'null'
        archived:
          type: boolean
        createdAt:
          format: datetime
          type: string
        creator:
          $ref: '#/components/schemas/PrincipalRef'
        folder:
          $ref: '#/components/schemas/FolderRef'
        id:
          type: string
        jobConfigs:
          items:
            type: object
          type: array
        model:
          type: string
        modelImplementationVersion:
          type: string
        modelVersion:
          type:
          - 'null'
          - string
        modifiedAt:
          format: datetime
          type: string
        predictionJobs:
          format: uri
          type: string
        status:
          enum:
          - AI_PROPOSED
          - BLOCKED
          - FAILED
          - HALTED
          - RUNNING
          - SUCCEEDED
          - WAITING
          type: string
      type: object
    GeneralError:
      properties:
        detail:
          type:
          - 'null'
          - string
          - object
        instance:
          type: string
        status:
          type: integer
        title:
          type:
          - 'null'
          - string
        type:
          type: string
      required:
      - type
      - title
      - detail
      - status
      - instance
      type: object
  responses:
    NotFound:
      content:
        application/problem+json:
          schema:
            $ref: '#/components/schemas/GeneralError'
      description: Not Found
    TooManyRequests:
      content:
        application/problem+json:
          schema:
            $ref: '#/components/schemas/GeneralError'
      description: Too Many Requests
    BadRequest:
      content:
        application/problem+json:
          schema:
            $ref: '#/components/schemas/GeneralError'
      description: Bad Request
    Forbidden:
      content:
        application/problem+json:
          schema:
            $ref: '#/components/schemas/GeneralError'
      description: Forbidden
    InternalServerError:
      content:
        application/problem+json:
          schema:
            $ref: '#/components/schemas/InternalServerError'
      description: Internal Server Error
  securitySchemes:
    basicApiKeyAuth:
      description: Use issued API key for standard access to the API
      scheme: basic
      type: http
    basicClientIdSecretAuth:
      description: Auth used as part of client credentials OAuth flow prior to receiving a bearer token.
      scheme: basic
      type: http
    oAuth:
      description: OAuth2 Client Credentials flow intended for service access
      flows:
        clientCredentials:
          scopes: {}
          tokenUrl: /oauth/token
      type: oauth2