Nanome

Nanome is a collaborative workspace for drug discovery — molecular visualization and design in VR/XR and the browser, backed by an in-session AI assistant called MARA. Scientists and agents load protein and small-molecule structures from public databases (RCSB PDB, AlphaFold, PubChem, ChEMBL, SWISS-MODEL, COD), organize them into scenes with rich visual representations (cartoons, surfaces, ball-and-stick, interactions), and collaborate inside shared 3D workspaces. Nanome exposes a REST Workspaces API (workspaces.nanome.ai) and an official Model Context Protocol (MCP) server so agents can build and populate workspaces programmatically, plus a Python library (nanome-lib) for authoring plugins. Surfaced as a portfolio company of Bullpen Capital and enriched into the API Evangelist network.

Nanome is listed with 2 APIs on the APIs.io network. Tagged areas include Company, Drug Discovery, Molecular Visualization, Life Sciences, and Cheminformatics.

Nanome’s developer surface includes documentation, engineering blog, pricing, signup flow, authentication, and 19 more developer resources.

🌐 Visit website 📡 Profile data on GitHub

33.2/100 thin ▬ flat Agent 12/100 agent aware Front door AI 4/6 moderate Heartbeat 100/100 alive saas Full breakdown ↓
scored 2026-11-06 · rubric v0.27.0 · Show this score on your site →

AccessFreemiumSelf serve⚡ Free to try

2 APIs 1 MCP Servers 2 Agent Skills

Company Drug DiscoveryMolecular VisualizationLife Sciences Cheminformatics Structural Biology Virtual Reality Collaboration Artificial Intelligence

Kin Score

Kin Score How this is scored →
scored 2026-11-06 · rubric v0.27.0

Composite quality — 33.2/100 · thin

Contract Quality 0.0 / 21

Developer Ergonomics 8.1 / 17

Access Clarity 10.7 / 17

Operational Transparency 2.0 / 11

Contract Governance 0.5 / 10

Discoverability 6.1 / 9

Regulatory Posture 2.8 / 15

Agent readiness — 12/100 · agent aware

Machine-Readable Contract 0 / 18

Agentic Access Contract 0 / 10

Documented Reversibility 0 / 6

MCP Server 12 / 12

Machine-Readable Auth 10 / 10

Idempotency 0 / 9

Stable Error Semantics 8 / 8

Request/Response Examples 0 / 7

Rate-Limit Signaling 0 / 7

Typed Event Surface 0 / 6

Agent Skills 5 / 5

Well-Known Catalog 0 / 4

Consent & Bot Identity 0 / 3

A2A Agent Card 0 / 8

Dry-Run / Simulate Mode 0 / 4

Delegated User Identity 0 / 6

Protected Resource Metadata 0 / 5

Registration Without a Human 0 / 6

Agentic Commerce Well-Known Document 0 / 5

Pagination 5 / 5

Distinct Operations 3 / 3

MCP Tool Quality 6 / 6

Regulatory Posture applies to this provider. Its tags matched the Health regime, so Regulatory Posture carries 15 points of the composite. If this regime is wrong for your business, say so on your provider repo — the applicability map is public and we will correct it.

Create-or-Update Ergonomics could not be measured. We hold no machine-readable contract for this provider to read, so there is nothing to measure a write surface against. Excluded rather than scored zero: never-measured and measured-empty are different facts. Publishing an OpenAPI is what makes this facet — and several others — scorable at all.

The six quality facets above are damped to 85 points between them, because the conditional facet above carries the other 15. That is why each facet's contribution is shown against a damped maximum: raising a quality facet moves the composite by 85% of its nominal weight, not 100%. The full arithmetic is at apis.io/rating/.

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Agent readiness — checks not met, largest first (exact, from this profile):

Machine-Readable Contract +18 pts — api_specs includes an OpenAPI document
Agentic Access Contract +10 pts — agentic_access artifact present (x-agentic-access), graded by author
Idempotency +9 pts — OpenAPI mutating operations declare an idempotency key — a header, a request-body property, or a named de-duplication token whose own description says so (verified); else common[].type matches /idempoten/i (documented)
A2A Agent Card +8 pts — a2a/-a2a.yml manifest, graded on conformance.grade against A2A 1.0.0
Rate-Limit Signaling +7 pts — OpenAPI responses document X-RateLimit-* / RateLimit headers (verified), else a rate_limits artifact or RateLimits link (documented)
Request/Response Examples +7 pts — share of operations carrying request/response examples; else an Examples / Code Samples link

9 more unmet checks in the Agent Readiness table above.

Kin Score — facets with the most composite points still available (weight × headroom):

Contract Quality scores 0.0 — up to +25.0 composite points
Contract Governance scores 4.5 — up to +11.5 composite points
Operational Transparency scores 18.4 — up to +10.6 composite points

Each check links to what satisfies it. Publish the artifact, or tell us where it already lives, and the score moves on the next scoring run.

Improve this rating by publishing the missing artifacts — every area above can be raised, and the full rubric is at apis.io/rating/. Every facet and dimension name above is a link: it opens that measurement's own page — what it means, the exact checks that feed it, how the whole catalog distributes on it, and the providers at the top of it. This rating is computed from the provider profile at artifacts.apis.io/nanome/apis.yml: open an issue on github.com/api-evangelist/nanome to ask a question or point us at an artifact you publish. Submit an artifact on GitHub — free → Manage your own listing — the Influence plan, $499/mo →

Markets this provider is in provisional

The Kin Score Market layer reads a provider inside its market: its position, and how deep its integrations go. Depth is only comparable within a position. Provisional and unweighted: not part of the Kin Score or agent readiness.

Market	Position	Depth	Registered MCP server	Declares compatibility
XR & Graphics (XR, 3D, GPU graphics)	distribution	9.6 (thin)	-	1
Agent Skills (SKILL.md packages)	distribution	9.6 (thin)	-	1

Registered MCP server and declares compatibility are report only — not weighted. Undeclared means we found nothing we can read, so there is no number: we never infer integrations.

Standards implemented 2

Standards this provider implements or carries. De facto ones are profiled and measured by the API Commons; formal ones come from the standards directory and are linked by the provider's own tags. The evidence column says how each claim was established — not that it was made.

Model Context Protocol (MCP)

measured — observed by APIs.io (documented)

Agent Skills

measured — observed by APIs.io (published)

APIs 2

Individual APIs this provider publishes, each with its own machine-readable definition.

Nanome Workspaces API

REST API to create workspaces, load molecular structures, create and rename scenes, and add visualization components. Bearer-token auth. Powers the MARA workspace builder, the o...

Nanome Account API

Account and session API (e.g. GET /user/session to validate a token).

MCP Servers 1

Model Context Protocol servers that expose these APIs to AI agents.

Nanome MCP Server

MCP server; 5 tools listed.

MCP SERVER

Agent Skills 2

Packaged agent skills for driving this provider's APIs from an AI assistant.

nanome-auth

AGENT SKILL

nanome-workspace

AGENT SKILL

Nanome API pricing

Prices published by Nanome, read 2026-10-07 from nanome.ai/pricing. A free plan or tier is listed.

Plan	Price
Starter (Free Web Seat)	Free Includes: Free + 50 MARA credits; Web-based molecular visualization (3 workspaces, 1 project); 5 most recent f
Academic Classroom / Personal — Free Web Seat	Free Includes: Equivalent to Starter tier
Academic Classroom / Personal — Full seat	$20.83/mo Includes: MCP Calls: 100; Nanome-hosted shared tenant collaboration server; access to 300+ tools
Academic Department — Full Web Seat	$4.17/mo Includes: Starting at, Minimum 50 licenses
Academic Department — Full seat	$12.50/mo Includes: MCP Calls: Custom
Commercial Cloud / Enterprise	Contact us Includes: MCP Calls: Custom; single tenant collaboration server; premium support

Plan details, limits and sources →

Pricing Plans 1

Published pricing tiers and plan structures.

Nanome Plans Pricing

6 plans

PLANS

Security Posture 2

Authentication, domain security, vulnerability disclosure, and trust-center signals.

Nanome Authentication

http · 1 scheme

SECURITY

Nanome Domain Security

TLSv1.3 · HSTS · DMARC

SECURITY

Resources

Get Started 2

Portal, sign-up, and the first successful call

DeveloperPortal

DeveloperPortal

SignUp

SignUp

Documentation 1

Reference material describing how the API behaves

Documentation

Documentation

Agent Surfaces 4

MCP servers, agent skills, and machine-readable catalogs

MCPServer

AgentSkill

WellKnown

LLMsTxt

Design & Contract 5

Pagination, idempotency, versioning, errors, and events

Lifecycle

Conventions

ErrorCatalog

DataModel

Conformance

Build 3

SDKs, sample code, and the tooling you integrate with

GitHubOrganization

GitHubOrganization

Packages

Packages

SDKs

SDKs

Access & Security 2

Authentication, authorization, and security posture

Authentication

Authentication

DomainSecurity

DomainSecurity

Operate 1

Status, limits, changes, and where to get help

StatusPage

StatusPage

Commercial 4

Pricing, plans, and the legal terms of use

Plans

Pricing

TermsOfService

PrivacyPolicy

Company 2

The organization behind the API

Website

Website

Blog

Blog

Source (apis.yml)

aid: nanome
name: Nanome
description: Nanome is a collaborative workspace for drug discovery — molecular visualization and design in VR/XR and the
  browser, backed by an in-session AI assistant called MARA. Scientists and agents load protein and small-molecule structures
  from public databases (RCSB PDB, AlphaFold, PubChem, ChEMBL, SWISS-MODEL, COD), organize them into scenes with rich visual
  representations (cartoons, surfaces, ball-and-stick, interactions), and collaborate inside shared 3D workspaces. Nanome
  exposes a REST Workspaces API (workspaces.nanome.ai) and an official Model Context Protocol (MCP) server so agents can build
  and populate workspaces programmatically, plus a Python library (nanome-lib) for authoring plugins. Surfaced as a portfolio
  company of Bullpen Capital and enriched into the API Evangelist network.
url: https://raw.githubusercontent.com/api-evangelist/nanome/refs/heads/main/apis.yml
x-type: company
x-source: vc-portfolio
x-backed-by:
- bullpen-capital
x-tier: stub
x-tier-reason: portfolio-lead
deliveryModel:
  model: saas
  open_source: false
  commercial: true
  callable_host: false
  label: Hosted service · you call their endpoint
  confidence: medium
  source:
  - pricing
  generated: '2026-08-28'
  method: derived
accessModel:
  pricing: freemium
  onboarding: self-serve
  trial: false
  try_now: true
  public: false
  gated: none
  gated_source:
  - onboarding
  label: Freemium · Self-serve signup
  confidence: medium
  source:
  - plans
  - authentication
  - security
  generated: '2026-11-06'
  method: derived
specificationVersion: '0.23'
created: '2026-07-17'
modified: '2026-07-20'
image: https://nanome.ai/MR_preview.jpg
x-docs-platform: vitepress
x-docs-platform-confidence: medium
x-docs-platform-checked: 2026-10-04
tags:
- Company
- Drug Discovery
- Molecular Visualization
- Life Sciences
- Cheminformatics
- Structural Biology
- Virtual Reality
- Collaboration
- Artificial Intelligence
apis:
- name: Nanome Workspaces API
  description: REST API to create workspaces, load molecular structures, create and rename scenes, and add visualization components.
    Bearer-token auth. Powers the MARA workspace builder, the official Nanome MCP server, and the Claude Code plugin.
  humanURL: https://docs.nanome.ai
  baseURL: https://workspaces.nanome.ai
  tags:
  - Molecular Visualization
  - Drug Discovery
  properties:
  - type: Authentication
    url: authentication/nanome-authentication.yml
  - type: Conventions
    url: conventions/nanome-conventions.yml
  - type: ErrorCatalog
    url: errors/nanome-error-codes.yml
  - type: DataModel
    url: data-model/nanome-data-model.yml
  - type: Conformance
    url: conformance/nanome-conformance.yml
- name: Nanome Account API
  description: Account and session API (e.g. GET /user/session to validate a token).
  humanURL: https://docs.nanome.ai
  baseURL: https://api.nanome.ai
  tags:
  - Account
  tags_raw:
  - Accounts
maintainers:
- FN: Kin Lane
  email: kin@apievangelist.com
- FN: APIs.json
  email: info@apis.io
common:
- type: Plans
  url: plans/nanome-plans-pricing.yml
- type: Website
  url: https://nanome.ai
- type: Documentation
  url: https://docs.nanome.ai
- type: DeveloperPortal
  url: https://docs.nanome.ai
- type: Blog
  url: https://nanome.ai/blog
- type: Pricing
  url: https://nanome.ai/pricing
- type: SignUp
  url: https://mara.nanome.ai/login
- type: TermsOfService
  url: https://nanome.ai/terms
- type: PrivacyPolicy
  url: https://nanome.ai/privacy
- type: GitHubOrganization
  url: https://github.com/nanome-ai
- type: StatusPage
  url: https://nanome.statuspage.io
- type: Authentication
  url: authentication/nanome-authentication.yml
- type: Packages
  url: packages/nanome-packages.yml
- type: SDKs
  url: packages/nanome-packages.yml
- type: MCPServer
  url: mcp/nanome-mcp.yml
- type: AgentSkill
  url: skills/_index.yml
- type: Lifecycle
  url: lifecycle/nanome-lifecycle.yml
- type: Conventions
  url: conventions/nanome-conventions.yml
- type: ErrorCatalog
  url: errors/nanome-error-codes.yml
- type: DataModel
  url: data-model/nanome-data-model.yml
- type: Conformance
  url: conformance/nanome-conformance.yml
- type: WellKnown
  url: well-known/nanome-well-known.yml
- type: DomainSecurity
  url: security/nanome-domain-security.yml
- type: LLMsTxt
  url: llms/nanome-llms.txt
x-enrichment:
  date: '2026-07-20'
  status: nochange
  artifacts_added: 0
  pass: local-v1

Nanome API — frequently asked questions

Does Nanome have an API?

Yes. APIs.io lists 2 APIs from Nanome, including Nanome Workspaces API and Nanome Account API.

How do I authenticate with the Nanome API?

Nanome uses bearer-token authentication (http · 1 scheme). The details are profiled on APIs.io as Nanome Authentication.

How much does the Nanome API cost?

Nanome publishes its prices; its Academic Classroom / Personal — Full seat plan is $20.83/mo as of 2026-10-07. APIs.io lists 6 pricing plans for Nanome, with each plan's price, limits and inclusions under Pricing on this page.

Does Nanome have an MCP server?

Yes. APIs.io lists 1 MCP server for Nanome: MCP server; 5 tools listed.

Is the Nanome API ready for AI agents?

Nanome has a Kin Score of 33.2 out of 100 (thin) and an Agent Readiness score of 12.4 (agent-aware), scored by API Evangelist on 2026-11-06.

Work with this as data

Every provider here is available over the APIs.io API and to AI agents over MCP.

MCP server

One button, every client — Claude, Cursor, VS Code and the rest.

https://apis.io/mcp

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get_provider_toolsEvery MCP tool they ship, with the operation each wraps.
get_provider_evidenceHow each part of their score was established. Free — the basis for a claim should not sit behind it.
get_provider_ratingPRO — composite, band, trend and facet scores.
apis_io_searchSTART HERE — APIs, providers and tags for one query, each with its total.
resolveTurn a domain, URL or GitHub org into the provider it belongs to.
find_cohortsEvery scored population of providers in the catalog.

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