Chemaxon

Chemaxon is a cheminformatics software company, now part of Certara (chemaxon.com redirects to certara.com/chemaxon), offering 'a complete cheminformatics workbench for molecule design, property calculation, search, data management, and more.' Its products include Marvin chemical drawing, JChem Base and JChem Microservices, Design Hub, Compound Registration, calculators and standardizer toolkits, with developer documentation at docs.chemaxon.com and Java, .NET and Python API references at apidocs.chemaxon.com.

Chemaxon publishes 40 API contracts indexed on the APIs.io network, including Amendment API, Audit API, Auto Mapper API, and 37 more. Tagged areas include Company, Cheminformatics, Chemistry, Drug Discovery, and Life Sciences.

The Chemaxon catalog on APIs.io includes 1 JSON-LD context and 1 Spectral governance ruleset.

Chemaxon’s developer surface includes changelog, sandbox, authentication, documentation, API reference, support, engineering blog, and 33 more developer resources.

🌐 Visit website 📡 Profile data on GitHub

50.1/100 developing Agent 44/100 agent ready Full breakdown ↓
scored 2026-11-13 · rubric v0.28.0 · Show this score on your site →

AccessEnterprise

9 published contracts 6 Agent Skills

Company Cheminformatics Chemistry Drug Discovery Life SciencesMolecular ModelingSoftware Development Kits

Kin Score

Kin Score How this is scored →
scored 2026-11-13 · rubric v0.28.0

Composite quality — 50.1/100 · developing

Contract Quality 10.2 / 19

Developer Ergonomics 9.2 / 15

Access Clarity 4.5 / 15

Operational Transparency 2.6 / 10

Contract Governance 3.2 / 9

Discoverability 5.6 / 8

Regulatory Posture 2.8 / 15

Create-or-Update Ergonomics 2.8 / 10

Agent readiness — 44/100 · agent ready

Machine-Readable Contract 18 / 18

Agentic Access Contract 10 / 10

Documented Reversibility 0 / 6

MCP Server 0 / 12

Machine-Readable Auth 10 / 10

Idempotency 0 / 9

Stable Error Semantics 8 / 8

Request/Response Examples 7 / 7

Rate-Limit Signaling 7 / 7

Typed Event Surface 0 / 6

Agent Skills 5 / 5

Well-Known Catalog 0 / 4

Consent & Bot Identity 0 / 3

A2A Agent Card 0 / 8

Dry-Run / Simulate Mode 0 / 4

Delegated User Identity 6 / 6

Protected Resource Metadata 5 / 5

Registration Without a Human 6 / 6

Agentic Commerce Well-Known Document 0 / 5

Pagination 0 / 5

Distinct Operations 3 / 3

MCP Tool Quality 6 / 6

Regulatory Posture applies to this provider. Its tags matched the Health regime, so Regulatory Posture carries 15 points of the composite. If this regime is wrong for your business, say so on your provider repo — the applicability map is public and we will correct it.

Create-or-Update Ergonomics applies to this provider. This API accepts writes, so it carries 10 points of the composite. It is scored from the published contracts themselves: whether a caller can create-or-update in one call, whether the write accepts a key the caller already holds, and whether the response says which branch ran. Without that, every write needs a search-and-branch in front of it, and the first time that check is skipped a duplicate record is created. Scored against the observed mean rather than raw — a provider at the catalog average is unchanged by this facet, not penalised by it.

The six quality facets above are damped to 75 points between them, because the conditional facet above carries the other 25. That is why each facet's contribution is shown against a damped maximum: raising a quality facet moves the composite by 75% of its nominal weight, not 100%. The full arithmetic is at apis.io/rating/.

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Agent readiness — checks not met, largest first (exact, from this profile):

MCP Server +12 pts — deployment.mode + probe verdict on the mcp/ manifest, not the pointer; an unprobed slug falls back to authorship Ask about this →
Idempotency +9 pts — OpenAPI mutating operations declare an idempotency key — a header, a request-body property, or a named de-duplication token whose own description says so (verified); else common[].type matches /idempoten/i (documented) Ask about this →
A2A Agent Card +8 pts — a2a/-a2a.yml manifest, graded on conformance.grade against A2A 1.0.0 Ask about this →
Typed Event Surface +6 pts — AsyncAPI document, OR webhooks/callbacks objects in the as-published OpenAPI, OR common[].type includes Webhooks Ask about this →
Documented Reversibility +6 pts — a reversal operation in the contract, graded up when a window is documented too Ask about this →
Pagination +5 pts — share of collection GETs (an array, or one wrapped in data/items/results ...) that declare a page/limit/offset/cursor parameter, a Link header or a next/cursor field; na with no collection GETs Ask about this →

4 more unmet checks in the Agent Readiness table above.

Kin Score — facets with the most composite points still available (weight × headroom):

Access Clarity scores 29.8 — up to +14.0 composite points Ask about this →
Contract Quality scores 54.4 — up to +11.4 composite points Ask about this →
Operational Transparency scores 26.2 — up to +9.6 composite points Ask about this →

Each check links to what satisfies it. Publish the artifact, or tell us where it already lives, and the score moves on the next scoring run.

Not sure how this applies to your stack? Ask about any one item. Kin Lane reads every question, looks at your profile and your situation, and replies with what a fix would take — scoped to that one area, priced up front, yours whether you ship it or not. Ask a question →

Improve this rating by publishing the missing artifacts — every area above can be raised, and the full rubric is at apis.io/rating/. Every facet and dimension name above is a link: it opens that measurement's own page — what it means, the exact checks that feed it, how the whole catalog distributes on it, and the providers at the top of it. This rating is computed from the provider profile at artifacts.apis.io/chemaxon/apis.yml: open an issue on github.com/api-evangelist/chemaxon to ask a question or point us at an artifact you publish. Submit an artifact on GitHub — free → Manage your own listing — the Influence plan, $499/mo →

Standards implemented 3

Standards this provider implements or carries. De facto ones are profiled and measured by the API Commons; formal ones come from the standards directory and are linked by the provider's own tags. The evidence column says how each claim was established — not that it was made.

OAuth 2.0 Protected Resource Metadata

measured — observed by APIs.io (verified)

Dynamic Client Registration

measured — observed by APIs.io (published)

OpenAPI

measured — observed by APIs.io (published)

APIs 40

Individual APIs this provider publishes, each with its own machine-readable definition.

Chemaxon Amendment API

Amendment related operations

Chemaxon Audit API

Audit related operations

Chemaxon Auto Mapper API

This controller lets you assign mapping values to atoms

Chemaxon Builtin Checker API

The Builtin Checker API from Chemaxon — 65 operation(s) for builtin checker.

Chemaxon Bulk amendment API

Bulk amendment related operations

Chemaxon Bulk registration API

Bulk registration related operations

Chemaxon Bulk upload API

Bulk upload related operations

Chemaxon Calculator API

The Calculator API from Chemaxon — 25 operation(s) for calculator.

Chemaxon Checker API

The Checker API from Chemaxon — 1 operation(s) for checker.

Chemaxon Checker Descriptor API

The Checker Descriptor API from Chemaxon — 4 operation(s) for checker descriptor.

Chemaxon Checker Fixer API

The Checker Fixer API from Chemaxon — 3 operation(s) for checker fixer.

Chemaxon Chemaxon built-in reactions API

The Chemaxon built-in reactions API from Chemaxon — 2 operation(s) for chemaxon built-in reactions.

Chemaxon Chemical-term evaluation API

The Chemical-term evaluation API from Chemaxon — 1 operation(s) for chemical-term evaluation.

Chemaxon CIP Stereo Calculator API

The CIP Stereo Calculator API from Chemaxon — 1 operation(s) for cip stereo calculator.

Chemaxon Color substructure hits API

Endpoint to color substructure hits in molecules

Chemaxon Compound retriever API

Compound retriever related operations

Chemaxon Database version management API

Endpoints to monitor and manage the different database versions and the automatic update process (the so-called "reindexing") from one version to another

Chemaxon Db Work queue handler controller API

Use this controller to handle async and background tasks

Chemaxon Dictionary API

Dictionary related operations.

Chemaxon Downstream API

Downstream related operations

Chemaxon Extractor API

Endpoint to extract textbox content from molecules

Chemaxon Forms API

Information about Forms and Fields

Chemaxon Fragmenter API

These endpoints can cut molecules into fragments

Chemaxon JSON Converter API

The JSON Converter API from Chemaxon — 2 operation(s) for json converter.

Chemaxon Markush API

The Markush API from Chemaxon — 1 operation(s) for markush.

Chemaxon Molecule Cleaner API

The Molecule Cleaner API from Chemaxon — 1 operation(s) for molecule cleaner.

Chemaxon Molecule format converter API

The Molecule format converter API from Chemaxon — 13 operation(s) for molecule format converter.

Chemaxon Molecule Standardizer API

The Molecule Standardizer API from Chemaxon — 4 operation(s) for molecule standardizer.

Chemaxon Molecule type information API

Use this service to get information about the molecule types. These types specify what to do with a structure during search. You can fine tune the search logic with different ar...

Chemaxon Multistep reaction controller API

The Multistep reaction controller API from Chemaxon — 2 operation(s) for multistep reaction controller.

Chemaxon R-group decomposition API

Use this controller to create r-group decompositions of targets for given query.

Chemaxon Reaction Converter API

The Reaction Converter API from Chemaxon — 1 operation(s) for reaction converter.

Chemaxon Reactor API

The Reactor API from Chemaxon — 2 operation(s) for reactor.

Chemaxon Reactor Work queue handler controller API

Use this controller to handle async and background tasks

Chemaxon Registration API

Registration related operations

Chemaxon Search API

Structure search and export related operations.

Chemaxon Standardized molecule search API

Endpoints to search for query structure in specified list of target structures while using standardization on structures

Chemaxon Store and search molecules and non chemical data API

Use this controller to manage molecule collections that also has non chemical data assigned to structures. Create (or delete) a collection (a.k.a. ''table''). Insert / delete / ...

Chemaxon Structure details API

Structure details and matching related operations.

Chemaxon Submission API

Structure search and export related queries.

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Agent Skills 6

Packaged agent skills for driving this provider's APIs from an AI assistant.

calculate-molecular-properties

AGENT SKILL

check-and-fix-structures

AGENT SKILL

convert-chemical-structures

AGENT SKILL

register-compound

AGENT SKILL

run-reaction

AGENT SKILL

search-structure-database

AGENT SKILL

Chemaxon API pricing

Pricing Plans 1

Published pricing tiers and plan structures.

Chemaxon Plans Pricing

0 plans

PLANS

Rate Limits 1

Documented rate limits and quota policies.

Chemaxon Rate Limits

0 limits

RATE LIMITS

Terms of Service 1

What its API terms permit and prohibit, quoted from its own page.

Chemaxon

7 quoted statements, read from Chemaxon's own page on 2026-11-09.

TERMS

Data License 1

How its data and outputs may be reused, quoted from its own terms.

Chemaxon

2 quoted statements, read from Chemaxon's own page on 2026-11-09.

LICENSE

Semantic Vocabularies 1

JSON-LD contexts and semantic vocabularies used across these APIs.

Chemaxon Context

120 classes · 276 properties

JSON-LD

Spectral Rules 1

Spectral governance rulesets for linting and validating these APIs. Counts are the severity each rule declares, not results of running them.

Chemaxon API Rules

44 rules · 26 error-severity 14 warn-severity 4 info-severity

SPECTRAL

OpenAPI Overlays 15

Overlays applied on top of this provider's contracts. Each card says who wrote it: a document the provider publishes, or one API Evangelist derived or generated.

Chemaxon Calculations Overlay

2 actions · update · chemaxon-calculations-openapi.yml

DERIVED

Chemaxon Checker Descriptor Api Certification Overlay

4 actions · update · chemaxon-checker-descriptor-api-openapi.yml

DERIVED

Chemaxon Compound Registration Overlay

3 actions · update · chemaxon-compound-registration-openapi.yml

DERIVED

Chemaxon Database Search Overlay

2 actions · update · chemaxon-database-search-openapi.yml

DERIVED

Chemaxon Database Version Management Api Certification Overlay

2 actions · update · chemaxon-database-version-management-api-openapi.yml

DERIVED

Chemaxon Db Work Queue Handler Controller Api Certification Overlay

1 action · update · chemaxon-db-work-queue-handler-controller-api-openapi.yml

DERIVED

Chemaxon Input Output Overlay

2 actions · update · chemaxon-input-output-openapi.yml

DERIVED

Chemaxon Markush Enumeration Overlay

2 actions · update · chemaxon-markush-enumeration-openapi.yml

DERIVED

Chemaxon Molecule Type Information Api Certification Overlay

1 action · update · chemaxon-molecule-type-information-api-openapi.yml

DERIVED

Chemaxon Reactor Overlay

2 actions · update · chemaxon-reactor-openapi.yml

DERIVED

Chemaxon Reactor Work Queue Handler Controller Api Certification Overlay

1 action · update · chemaxon-reactor-work-queue-handler-controller-api-openapi.yml

DERIVED

Chemaxon Store And Search Molecules And Non Chemical Data Api Certification Overlay

1 action · update · chemaxon-store-and-search-molecules-and-non-chemical-data-api-openapi.yml

DERIVED

Chemaxon Structure Checker Overlay

2 actions · update · chemaxon-structure-checker-openapi.yml

DERIVED

Chemaxon Structure Manipulation Overlay

2 actions · update · chemaxon-structure-manipulation-openapi.yml

DERIVED

Chemaxon Task Manager Overlay

2 actions · update · chemaxon-task-manager-openapi.yml

DERIVED

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JSON Schema 82

Standalone JSON Schema definitions for this provider's data models.

AdvancedAutoRegisterRequest

10 properties

JSON SCHEMA

AromatizerRequest

5 properties

JSON SCHEMA

AuditSummary

6 properties

JSON SCHEMA

AutoMapperRequest

4 properties

JSON SCHEMA

BatchMolConvertRequest

4 properties

JSON SCHEMA

BatchMolConvertResponseElement

3 properties

JSON SCHEMA

BulkAmendStatusRequestParams

3 properties

JSON SCHEMA

BulkInsertRequest

8 properties

JSON SCHEMA

BulkloaderAnalyzerRequest

3 properties

JSON SCHEMA

BulkloaderResponse

3 properties

JSON SCHEMA

CalculatorsStructureRequestChemTermRequest

3 properties

JSON SCHEMA

CalculatorsStructureRequestNmrRequest

9 properties

JSON SCHEMA

CalculatorsStructureRequestPkaRequest

10 properties

JSON SCHEMA

CalculatorsStructureRequestPolarSurfaceAreaRequest

7 properties

JSON SCHEMA

CalculatorsStructureRequestStereoisomerRequest

9 properties

JSON SCHEMA

CalculatorsStructureRequestTopologyAnalyserRequest

15 properties

JSON SCHEMA

CheckerDescriptionResponse

4 properties

JSON SCHEMA

CheckerResponse

16 properties

JSON SCHEMA

CheckerWithFixersDescriptionResponse

5 properties

JSON SCHEMA

CipStereoCalculatorRequest

2 properties

JSON SCHEMA

CipStereoCalculatorResponse

3 properties

JSON SCHEMA

DatabaseVersionStatusResponse

6 properties

JSON SCHEMA

DbAddStructuresRequest

2 properties

JSON SCHEMA

DbTaskDescriptor

6 properties

JSON SCHEMA

Dictionary

2 properties

JSON SCHEMA

DownloadLog

8 properties

JSON SCHEMA

DownstreamMessageListResponse

1 properties

JSON SCHEMA

DownstreamStatusResponse

2 properties

JSON SCHEMA

ElementalAnalysisCalculatorsStructureRequest

6 properties

JSON SCHEMA

EnumerationRequest

9 properties

JSON SCHEMA

ExportSearchRequest

10 properties

JSON SCHEMA

FailedStructuresResponse

2 properties

JSON SCHEMA

FileDescriptor

2 properties

JSON SCHEMA

FixerDescriptionResponse

4 properties

JSON SCHEMA

Form

5 properties

JSON SCHEMA

FullFragmentCombinedSearchRequest

10 properties

JSON SCHEMA

FullFragmentSearchRequest

9 properties

JSON SCHEMA

HitDisplayRequest

8 properties

JSON SCHEMA

HitDisplayResponse

2 properties

JSON SCHEMA

HydrogenizerRequest

5 properties

JSON SCHEMA

InsertMoleculesResponse

9 properties

JSON SCHEMA

ItemSearchResult

2 properties

JSON SCHEMA

LeverWrapper

1 properties

JSON SCHEMA

MarkushFragmentationResponse

2 properties

JSON SCHEMA

MarkushReactionFragmentationResponse

2 properties

JSON SCHEMA

MetalloceneCheckerResponse

8 properties

JSON SCHEMA

MolAppenderRequest

3 properties

JSON SCHEMA

MolConvertRequest

3 properties

JSON SCHEMA

MolConvertResponse

3 properties

JSON SCHEMA

MolSplitterRequest

3 properties

JSON SCHEMA

MolWithPropertiesAppenderRequest

3 properties

JSON SCHEMA

MoleculeTypeResponse

11 properties

JSON SCHEMA

MonitorResponse

5 properties

JSON SCHEMA

MultistepReactionDecomposerRequest

3 properties

JSON SCHEMA

MultistepReactionRequest

4 properties

JSON SCHEMA

PublishTreesRequest

1 properties

JSON SCHEMA

ReactionConverterRequest

3 properties

JSON SCHEMA

ReactionDetailedResponse

18 properties

JSON SCHEMA

ReactionFragmentationResponse

3 properties

JSON SCHEMA

ReactionListResponse

1 properties

JSON SCHEMA

ReactionRequestCombinatorialRequestOptions

8 properties

JSON SCHEMA

ReactionRequestReactRequestOptions

8 properties

JSON SCHEMA

ReactorAddStructuresRequest

3 properties

JSON SCHEMA

ReactorResponse

2 properties

JSON SCHEMA

ReactorTaskCreationRequest

2 properties

JSON SCHEMA

ReactorTaskDescriptor

6 properties

JSON SCHEMA

RegistryStructure

17 properties

JSON SCHEMA

RgroupDecomposerRequest

3 properties

JSON SCHEMA

SearchRequest

9 properties

JSON SCHEMA

StandardizedDuplicateFilterRequest

3 properties

JSON SCHEMA

StandardizedMolSearchRequest

4 properties

JSON SCHEMA

StatelessSimilaritySearchRequest

5 properties

JSON SCHEMA

StructureIdPair

2 properties

JSON SCHEMA

StructureWithSimilarity

3 properties

JSON SCHEMA

Submission

0 properties

JSON SCHEMA

SubmissionSearchRequestParams

19 properties

JSON SCHEMA

SubmissionStatus

0 properties

JSON SCHEMA

SubstructureCombinedSearchRequest

11 properties

JSON SCHEMA

SubstructureSearchRequest

10 properties

JSON SCHEMA

UploadSubmissionStatistics

13 properties

JSON SCHEMA

ValidateAutoRegistrationRequest

10 properties

JSON SCHEMA

XmlBasedCheckerFixerRequest

4 properties

JSON SCHEMA

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Security Posture 2

Authentication, domain security, vulnerability disclosure, and trust-center signals.

Chemaxon Authentication

4 schemes

SECURITY

Chemaxon Domain Security

TLSv1.3 · DMARC

SECURITY

Agentic Access (API Evangelist recommendations) 1

Recommended x-agentic-access execution contracts for AI agents.

Chemaxon Agentic Access

258 operations · 153 acting · 1 human-in-the-loop

258 operations · 153 acting

AGENTIC

Resources

Get Started 2

Portal, sign-up, and the first successful call

Sandbox

Sandbox

DeveloperPortal

DeveloperPortal

Documentation 3

Reference material describing how the API behaves

Documentation

Documentation

APIReference

APIReference

APIReference

APIReference

Agent Surfaces 4

MCP servers, agent skills, and machine-readable catalogs

AgenticAccess

AgentSkill

LLMsTxt

WellKnown

Design & Contract 9

Pagination, idempotency, versioning, errors, and events

Spectral

JSONLD

Vocabulary

DataModel

Components

Conventions

Lifecycle

ErrorCatalog

Conformance

Scroll for all 9

Build 4

SDKs, sample code, and the tooling you integrate with

IntegrationEdges

IntegrationEdges

SDKs

SDKs

Packages

Packages

GitHubOrganization

GitHubOrganization

Access & Security 3

Authentication, authorization, and security posture

Authentication

Authentication

DomainSecurity

DomainSecurity

TrustCenter

TrustCenter

Operate 4

Status, limits, changes, and where to get help

ChangeLog

Deprecation

Support

Contact

Commercial 4

Pricing, plans, and the legal terms of use

TermsOfService

PrivacyPolicy

UsageTerms

DataLicense

Company 3

The organization behind the API

Website

Website

Blog

Blog

Newsroom

Newsroom

Other 4

Properties that don't map to a standard resource type

Overlay

Hosts

Vendors

Leadership

Source (apis.yml)

aid: chemaxon
name: Chemaxon
description: Chemaxon is a cheminformatics software company, now part of Certara (chemaxon.com redirects to certara.com/chemaxon),
  offering 'a complete cheminformatics workbench for molecule design, property calculation, search, data management, and more.'
  Its products include Marvin chemical drawing, JChem Base and JChem Microservices, Design Hub, Compound Registration, calculators
  and standardizer toolkits, with developer documentation at docs.chemaxon.com and Java, .NET and Python API references at
  apidocs.chemaxon.com.
url: https://artifacts.apis.io/chemaxon/apis.yml
x-type: company
x-source: harvest:apisio-search-qc-2026-10-24
x-tier: profiled
x-tier-reason: enrichment pass 2026-11-03 (modular-v1; was harvest)
accessModel:
  pricing: enterprise
  onboarding: unknown
  trial: false
  try_now: false
  public: false
  label: Enterprise
  confidence: medium
  probe_state: covered
  source:
  - authentication
  - security
  - sandbox
  generated: '2026-11-13'
  method: derived
specificationVersion: '0.20'
created: '2026-11-03'
modified: '2026-11-03'
tags:
- Company
- Cheminformatics
- Chemistry
- Drug Discovery
- Life Sciences
- Molecular Modeling
- Software Development Kits
maintainers:
- FN: Kin Lane
  email: kin@apievangelist.com
- FN: APIs.json
  email: info@apis.io
image: https://www.certara.com/wp-content/uploads/2025/03/Chemaxon.png
common:
- type: AgenticAccess
  url: agentic-access/chemaxon-agentic-access.yml
- type: Spectral
  url: rules/chemaxon-rules.yml
- type: JSONLD
  url: json-ld/chemaxon-context.jsonld
- type: Vocabulary
  url: vocabulary/chemaxon-vocabulary.yml
- type: AgentSkill
  url: skills/_index.yml
- type: DataModel
  url: data-model/chemaxon-data-model.yml
- type: Components
  url: components/chemaxon-components.yml
- type: ChangeLog
  url: changelog/chemaxon-changelog.yml
- type: Conventions
  url: conventions/chemaxon-conventions.yml
- type: Sandbox
  url: sandbox/chemaxon-sandbox.yml
- type: Authentication
  url: authentication/chemaxon-authentication.yml
- type: Deprecation
  url: lifecycle/chemaxon-lifecycle.yml
- type: Lifecycle
  url: lifecycle/chemaxon-lifecycle.yml
- type: ErrorCatalog
  url: errors/chemaxon-problem-types.yml
- type: Conformance
  url: conformance/chemaxon-conformance.yml
- type: Overlay
  url: overlays/chemaxon-calculations-overlay.yaml
- type: LLMsTxt
  url: llms/chemaxon-llms.txt
- type: WellKnown
  url: well-known/chemaxon-well-known.yml
- type: Hosts
  url: hosts/chemaxon-hosts.yml
- type: IntegrationEdges
  url: integrations/chemaxon-integration-edges.yml
- type: Vendors
  url: vendors/chemaxon-vendors.yml
- type: SDKs
  url: packages/chemaxon-packages.yml
- type: Packages
  url: packages/chemaxon-packages.yml
- type: Leadership
  url: https://www.certara.com/leadership/
- type: DomainSecurity
  url: security/chemaxon-domain-security.yml
- type: Website
  url: https://chemaxon.com
- type: Documentation
  url: https://docs.chemaxon.com/latest/index.html
- type: DeveloperPortal
  url: https://apidocs.chemaxon.com/
- type: APIReference
  url: https://apidocs.chemaxon.com/jchem/developer/beans/api/index.html
- type: APIReference
  url: https://apidocs.chemaxon.com/python_api/apidocs/chemaxon.html
- type: Support
  url: https://certara.my.site.com/support/s/
- type: Blog
  url: https://www.certara.com/resources/blogs/
- type: GitHubOrganization
  url: https://github.com/chemaxon
- type: TermsOfService
  url: https://docs.chemaxon.com/latest/legal_terms-of-use.html
- type: PrivacyPolicy
  url: https://docs.chemaxon.com/latest/legal_privacy-policy.html
- type: TrustCenter
  url: https://trust.certara.com/
- type: Newsroom
  url: https://www.certara.com/company/news/
- type: Contact
  url: https://www.certara.com/company/contact/
- type: UsageTerms
  url: terms/chemaxon-terms-of-service.yml
- type: DataLicense
  url: data-license/chemaxon-data-license.yml
apis:
- aid: chemaxon:chemaxon-amendment-api
  name: Chemaxon Amendment API
  description: Amendment related operations
  humanURL: https://jchem-microservices.chemaxon.com/jws-calculations/api/index.html
  baseURL: https://jchem-microservices.chemaxon.com/jws-calculations
  tags:
  - Amendment
  properties:
  - type: OpenAPI
    url: openapi/chemaxon-amendment-api-openapi.yml
  - type: Documentation
    url: https://docs.chemaxon.com/latest/jchem-microservices_developer-guide.html
  - type: Documentation
    url: https://docs.chemaxon.com/latest/compound-registration_api-documentation.html
  - type: JSONSchema
    url: json-schema/chemaxon-registry-structure-schema.json
- aid: chemaxon:chemaxon-audit-api
  name: Chemaxon Audit API
  description: Audit related operations
  humanURL: https://jchem-microservices.chemaxon.com/jws-calculations/api/index.html
  baseURL: https://jchem-microservices.chemaxon.com/jws-calculations
  tags:
  - Audit
  properties:
  - type: OpenAPI
    url: openapi/chemaxon-audit-api-openapi.yml
  - type: Documentation
    url: https://docs.chemaxon.com/latest/jchem-microservices_developer-guide.html
  - type: Documentation
    url: https://docs.chemaxon.com/latest/compound-registration_api-documentation.html
  - type: JSONSchema
    url: json-schema/chemaxon-audit-summary-schema.json
  - type: JSONSchema
    url: json-schema/chemaxon-download-log-schema.json
- aid: chemaxon:chemaxon-automapper-api
  name: Chemaxon Auto Mapper API
  description: This controller lets you assign mapping values to atoms
  humanURL: https://jchem-microservices.chemaxon.com/jws-calculations/api/index.html
  baseURL: https://jchem-microservices.chemaxon.com/structure-manipulation
  tags:
  - AutoMapper
  properties:
  - type: OpenAPI
    url: openapi/chemaxon-automapper-api-openapi.yml
  - type: Documentation
    url: https://docs.chemaxon.com/latest/jchem-microservices_developer-guide.html
  - type: JSONSchema
    url: json-schema/chemaxon-auto-mapper-request-schema.json
  - type: Documentation
    url: https://docs.chemaxon.com/latest/compound-registration_api-documentation.html
- aid: chemaxon:chemaxon-builtin-checker-api
  name: Chemaxon Builtin Checker API
  description: The Builtin Checker API from Chemaxon — 65 operation(s) for builtin checker.
  humanURL: https://jchem-microservices.chemaxon.com/jws-calculations/api/index.html
  baseURL: https://jchem-microservices.chemaxon.com/jws-checker-fixer
  tags:
  - Builtin Checker
  properties:
  - type: OpenAPI
    url: openapi/chemaxon-builtin-checker-api-openapi.yml
  - type: Documentation
    url: https://docs.chemaxon.com/latest/jchem-microservices_developer-guide.html
  - type: JSONSchema
    url: json-schema/chemaxon-metallocene-checker-response-schema.json
  - type: Documentation
    url: https://docs.chemaxon.com/latest/compound-registration_api-documentation.html
- aid: chemaxon:chemaxon-bulk-amendment-api
  name: Chemaxon Bulk amendment API
  description: Bulk amendment related operations
  humanURL: https://jchem-microservices.chemaxon.com/jws-calculations/api/index.html
  baseURL: https://jchem-microservices.chemaxon.com/jws-calculations
  tags:
  - Bulk amendment
  properties:
  - type: OpenAPI
    url: openapi/chemaxon-bulk-amendment-api-openapi.yml
  - type: Documentation
    url: https://docs.chemaxon.com/latest/jchem-microservices_developer-guide.html
  - type: Documentation
    url: https://docs.chemaxon.com/latest/compound-registration_api-documentation.html
  - type: JSONSchema
    url: json-schema/chemaxon-registry-structure-schema.json
  - type: JSONSchema
    url: json-schema/chemaxon-bulk-amend-status-request-params-schema.json
- aid: chemaxon:chemaxon-bulk-registration-api
  name: Chemaxon Bulk registration API
  description: Bulk registration related operations
  humanURL: https://jchem-microservices.chemaxon.com/jws-calculations/api/index.html
  baseURL: https://jchem-microservices.chemaxon.com/jws-calculations
  tags:
  - Bulk registration
  properties:
  - type: OpenAPI
    url: openapi/chemaxon-bulk-registration-api-openapi.yml
  - type: Documentation
    url: https://docs.chemaxon.com/latest/jchem-microservices_developer-guide.html
  - type: Documentation
    url: https://docs.chemaxon.com/latest/compound-registration_api-documentation.html
  - type: JSONSchema
    url: json-schema/chemaxon-upload-submission-statistics-schema.json
  - type: JSONSchema
    url: json-schema/chemaxon-bulk-insert-request-schema.json
  - type: JSONSchema
    url: json-schema/chemaxon-bulkloader-response-schema.json
- aid: chemaxon:chemaxon-bulk-upload-api
  name: Chemaxon Bulk upload API
  description: Bulk upload related operations
  humanURL: https://jchem-microservices.chemaxon.com/jws-calculations/api/index.html
  baseURL: https://jchem-microservices.chemaxon.com/jws-calculations
  tags:
  - Bulk Upload
  tags_raw:
  - Bulk upload
  properties:
  - type: OpenAPI
    url: openapi/chemaxon-bulk-upload-api-openapi.yml
  - type: Documentation
    url: https://docs.chemaxon.com/latest/jchem-microservices_developer-guide.html
  - type: Documentation
    url: https://docs.chemaxon.com/latest/compound-registration_api-documentation.html
  - type: JSONSchema
    url: json-schema/chemaxon-file-descriptor-schema.json
  - type: JSONSchema
    url: json-schema/chemaxon-bulkloader-analyzer-request-schema.json
- aid: chemaxon:chemaxon-calculator-api
  name: Chemaxon Calculator API
  description: The Calculator API from Chemaxon — 25 operation(s) for calculator.
  humanURL: https://jchem-microservices.chemaxon.com/jws-calculations/api/index.html
  baseURL: https://jchem-microservices.chemaxon.com/jws-calculations
  tags:
  - Calculator
  properties:
  - type: OpenAPI
    url: openapi/chemaxon-calculator-api-openapi.yml
  - type: Documentation
    url: https://docs.chemaxon.com/latest/jchem-microservices_developer-guide.html
  - type: JSONSchema
    url: json-schema/chemaxon-calculators-structure-request-topology-analyser-request-schema.json
  - type: JSONSchema
    url: json-schema/chemaxon-elemental-analysis-calculators-structure-request-schema.json
  - type: JSONSchema
    url: json-schema/chemaxon-calculators-structure-request-stereoisomer-request-schema.json
  - type: JSONSchema
    url: json-schema/chemaxon-calculators-structure-request-nmr-request-schema.json
  - type: JSONSchema
    url: json-schema/chemaxon-calculators-structure-request-pka-request-schema.json
  - type: JSONSchema
    url: json-schema/chemaxon-calculators-structure-request-polar-surface-area-request-schema.json
  - type: Documentation
    url: https://docs.chemaxon.com/latest/compound-registration_api-documentation.html
- aid: chemaxon:chemaxon-checker-api
  name: Chemaxon Checker API
  description: The Checker API from Chemaxon — 1 operation(s) for checker.
  humanURL: https://jchem-microservices.chemaxon.com/jws-calculations/api/index.html
  baseURL: https://jchem-microservices.chemaxon.com/jws-checker-fixer
  tags:
  - Checker
  properties:
  - type: OpenAPI
    url: openapi/chemaxon-checker-api-openapi.yml
  - type: Documentation
    url: https://docs.chemaxon.com/latest/jchem-microservices_developer-guide.html
  - type: JSONSchema
    url: json-schema/chemaxon-checker-response-schema.json
  - type: JSONSchema
    url: json-schema/chemaxon-metallocene-checker-response-schema.json
  - type: Documentation
    url: https://docs.chemaxon.com/latest/compound-registration_api-documentation.html
- aid: chemaxon:chemaxon-checker-descriptor-api
  name: Chemaxon Checker Descriptor API
  description: The Checker Descriptor API from Chemaxon — 4 operation(s) for checker descriptor.
  humanURL: https://jchem-microservices.chemaxon.com/jws-calculations/api/index.html
  baseURL: https://jchem-microservices.chemaxon.com/jws-checker-fixer
  tags:
  - Checker Descriptor
  properties:
  - type: OpenAPI
    url: openapi/chemaxon-checker-descriptor-api-openapi.yml
  - type: Documentation
    url: https://docs.chemaxon.com/latest/jchem-microservices_developer-guide.html
  - type: JSONSchema
    url: json-schema/chemaxon-checker-with-fixers-description-response-schema.json
  - type: JSONSchema
    url: json-schema/chemaxon-checker-description-response-schema.json
  - type: JSONSchema
    url: json-schema/chemaxon-fixer-description-response-schema.json
  - type: Documentation
    url: https://docs.chemaxon.com/latest/compound-registration_api-documentation.html
- aid: chemaxon:chemaxon-checker-fixer-api
  name: Chemaxon Checker Fixer API
  description: The Checker Fixer API from Chemaxon — 3 operation(s) for checker fixer.
  humanURL: https://jchem-microservices.chemaxon.com/jws-calculations/api/index.html
  baseURL: https://jchem-microservices.chemaxon.com/jws-checker-fixer
  tags:
  - Checker Fixer
  properties:
  - type: OpenAPI
    url: openapi/chemaxon-checker-fixer-api-openapi.yml
  - type: Documentation
    url: https://docs.chemaxon.com/latest/jchem-microservices_developer-guide.html
  - type: JSONSchema
    url: json-schema/chemaxon-xml-based-checker-fixer-request-schema.json
  - type: Documentation
    url: https://docs.chemaxon.com/latest/compound-registration_api-documentation.html
- aid: chemaxon:chemaxon-chemaxon-built-in-reactions-api
  name: Chemaxon Chemaxon built-in reactions API
  description: The Chemaxon built-in reactions API from Chemaxon — 2 operation(s) for chemaxon built-in reactions.
  humanURL: https://jchem-microservices.chemaxon.com/jws-calculations/api/index.html
  baseURL: https://jchem-microservices.chemaxon.com/jws-reactor
  tags:
  - Chemaxon built-in reactions
  properties:
  - type: OpenAPI
    url: openapi/chemaxon-chemaxon-built-in-reactions-api-openapi.yml
  - type: Documentation
    url: https://docs.chemaxon.com/latest/jchem-microservices_developer-guide.html
  - type: JSONSchema
    url: json-schema/chemaxon-reaction-detailed-response-schema.json
  - type: JSONSchema
    url: json-schema/chemaxon-reaction-list-response-schema.json
  - type: Documentation
    url: https://docs.chemaxon.com/latest/compound-registration_api-documentation.html
- aid: chemaxon:chemaxon-chemical-term-evaluation-api
  name: Chemaxon Chemical-term evaluation API
  description: The Chemical-term evaluation API from Chemaxon — 1 operation(s) for chemical-term evaluation.
  humanURL: https://jchem-microservices.chemaxon.com/jws-calculations/api/index.html
  baseURL: https://jchem-microservices.chemaxon.com/jws-calculations
  tags:
  - Chemical-term evaluation
  properties:
  - type: OpenAPI
    url: openapi/chemaxon-chemical-term-evaluation-api-openapi.yml
  - type: Documentation
    url: https://docs.chemaxon.com/latest/jchem-microservices_developer-guide.html
  - type: Documentation
    url: https://docs.chemaxon.com/latest/compound-registration_api-documentation.html
  - type: JSONSchema
    url: json-schema/chemaxon-calculators-structure-request-chem-term-request-schema.json
- aid: chemaxon:chemaxon-cip-stereo-calculator-api
  name: Chemaxon CIP Stereo Calculator API
  description: The CIP Stereo Calculator API from Chemaxon — 1 operation(s) for cip stereo calculator.
  humanURL: https://jchem-microservices.chemaxon.com/jws-calculations/api/index.html
  baseURL: https://jchem-microservices.chemaxon.com/structure-manipulation
  tags:
  - CIP Stereo Calculator
  properties:
  - type: OpenAPI
    url: openapi/chemaxon-cip-stereo-calculator-api-openapi.yml
  - type: Documentation
    url: https://docs.chemaxon.com/latest/jchem-microservices_developer-guide.html
  - type: Documentation
    url: https://docs.chemaxon.com/latest/compound-registration_api-documentation.html
  - type: JSONSchema
    url: json-schema/chemaxon-cip-stereo-calculator-response-schema.json
  - type: JSONSchema
    url: json-schema/chemaxon-cip-stereo-calculator-request-schema.json
- aid: chemaxon:chemaxon-color-substructure-hits-api
  name: Chemaxon Color substructure hits API
  description: Endpoint to color substructure hits in molecules
  humanURL: https://jchem-microservices.chemaxon.com/jws-calculations/api/index.html
  baseURL: https://jchem-microservices.chemaxon.com/jwsdb
  tags:
  - Color substructure hits
  properties:
  - type: OpenAPI
    url: openapi/chemaxon-color-substructure-hits-api-openapi.yml
  - type: Documentation
    url: https://docs.chemaxon.com/latest/jchem-microservices_developer-guide.html
  - type: Documentation
    url: https://docs.chemaxon.com/latest/compound-registration_api-documentation.html
  - type: JSONSchema
    url: json-schema/chemaxon-hit-display-request-schema.json
  - type: JSONSchema
    url: json-schema/chemaxon-hit-display-response-schema.json
- aid: chemaxon:chemaxon-compound-retriever-api
  name: Chemaxon Compound retriever API
  description: Compound retriever related operations
  humanURL: https://jchem-microservices.chemaxon.com/jws-calculations/api/index.html
  baseURL: https://jchem-microservices.chemaxon.com/jws-calculations
  tags:
  - Compound retriever
  properties:
  - type: OpenAPI
    url: openapi/chemaxon-compound-retriever-api-openapi.yml
  - type: Documentation
    url: https://docs.chemaxon.com/latest/jchem-microservices_developer-guide.html
  - type: Documentation
    url: https://docs.chemaxon.com/latest/compound-registration_api-documentation.html
- aid: chemaxon:chemaxon-database-version-management-api
  name: Chemaxon Database version management API
  description: Endpoints to monitor and manage the different database versions and the automatic update process (the so-called
    "reindexing") from one version to another
  humanURL: https://jchem-microservices.chemaxon.com/jws-calculations/api/index.html
  baseURL: https://jchem-microservices.chemaxon.com/jwsdb
  tags:
  - Database version management
  properties:
  - type: OpenAPI
    url: openapi/chemaxon-database-version-management-api-openapi.yml
  - type: Documentation
    url: https://docs.chemaxon.com/latest/jchem-microservices_developer-guide.html
  - type: Documentation
    url: https://docs.chemaxon.com/latest/compound-registration_api-documentation.html
  - type: JSONSchema
    url: json-schema/chemaxon-database-version-status-response-schema.json
  - type: JSONSchema
    url: json-schema/chemaxon-failed-structures-response-schema.json
- aid: chemaxon:chemaxon-db-work-queue-handler-controller-api
  name: Chemaxon Db Work queue handler controller API
  description: Use this controller to handle async and background tasks
  humanURL: https://jchem-microservices.chemaxon.com/jws-calculations/api/index.html
  baseURL: https://jchem-microservices.chemaxon.com/jws-taskmanager
  tags:
  - Db Work queue handler controller
  properties:
  - type: OpenAPI
    url: openapi/chemaxon-db-work-queue-handler-controller-api-openapi.yml
  - type: Documentation
    url: https://docs.chemaxon.com/latest/jchem-microservices_developer-guide.html
  - type: JSONSchema
    url: json-schema/chemaxon-db-task-descriptor-schema.json
  - type: JSONSchema
    url: json-schema/chemaxon-monitor-response-schema.json
  - type: JSONSchema
    url: json-schema/chemaxon-db-add-structures-request-schema.json
  - type: Documentation
    url: https://docs.chemaxon.com/latest/compound-registration_api-documentation.html
- aid: chemaxon:chemaxon-dictionary-api
  name: Chemaxon Dictionary API
  description: Dictionary related operations.
  humanURL: https://jchem-microservices.chemaxon.com/jws-calculations/api/index.html
  baseURL: https://jchem-microservices.chemaxon.com/jws-calculations
  tags:
  - Dictionaries
  tags_raw:
  - Dictionary
  properties:
  - type: OpenAPI
    url: openapi/chemaxon-dictionary-api-openapi.yml
  - type: Documentation
    url: https://docs.chemaxon.com/latest/jchem-microservices_developer-guide.html
  - type: Documentation
    url: https://docs.chemaxon.com/latest/compound-registration_api-documentation.html
  - type: JSONSchema
    url: json-schema/chemaxon-item-search-result-schema.json
  - type: JSONSchema
    url: json-schema/chemaxon-dictionary-schema.json
- aid: chemaxon:chemaxon-downstream-api
  name: Chemaxon Downstream API
  description: Downstream related operations
  humanURL: https://jchem-microservices.chemaxon.com/jws-calculations/api/index.html
  baseURL: https://jchem-microservices.chemaxon.com/jws-calculations
  tags:
  - Downstream
  properties:
  - type: OpenAPI
    url: openapi/chemaxon-downstream-api-openapi.yml
  - type: Documentation
    url: https://docs.chemaxon.com/latest/jchem-microservices_developer-guide.html
  - type: Documentation
    url: https://docs.chemaxon.com/latest/compound-registration_api-documentation.html
  - type: JSONSchema
    url: json-schema/chemaxon-publish-trees-request-schema.json
  - type: JSONSchema
    url: json-schema/chemaxon-downstream-status-response-schema.json
  - type: JSONSchema
    url: json-schema/chemaxon-downstream-message-list-response-schema.json
- aid: chemaxon:chemaxon-extractor-api
  name: Chemaxon Extractor API
  description: Endpoint to extract textbox content from molecules
  humanURL: https://jchem-microservices.chemaxon.com/jws-calculations/api/index.html
  baseURL: https://jchem-microservices.chemaxon.com/structure-manipulation
  tags:
  - Extractor
  properties:
  - type: OpenAPI
    url: openapi/chemaxon-extractor-api-openapi.yml
  - type: Documentation
    url: https://docs.chemaxon.com/latest/jchem-microservices_developer-guide.html
  - type: Documentation
    url: https://docs.chemaxon.com/latest/compound-registration_api-documentation.html
- aid: chemaxon:chemaxon-forms-api
  name: Chemaxon Forms API
  description: Information about Forms and Fields
  humanURL: https://jchem-microservices.chemaxon.com/jws-calculations/api/index.html
  baseURL: https://jchem-microservices.chemaxon.com/jws-calculations
  tags:
  - Forms
  properties:
  - type: OpenAPI
    url: openapi/chemaxon-forms-api-openapi.yml
  - type: Documentation
    url: https://docs.chemaxon.com/latest/jchem-microservices_developer-guide.html
  - type: Documentation
    url: https://docs.chemaxon.com/latest/compound-registration_api-documentation.html
  - type: JSONSchema
    url: json-schema/chemaxon-form-schema.json
  - type: JSONSchema
    url: json-schema/chemaxon-lever-wrapper-schema.json
- aid: chemaxon:chemaxon-fragmenter-api
  name: Chemaxon Fragmenter API
  description: These endpoints can cut molecules into fragments
  humanURL: https://jchem-microservices.chemaxon.com/jws-calculations/api/index.html
  baseURL: https://jchem-microservices.chemaxon.com/structure-manipulation
  tags:
  - Fragmenter
  properties:
  - type: OpenAPI
    url: openapi/chemaxon-fragmenter-api-openapi.yml
  - type: Documentation
    url: https://docs.chemaxon.com/latest/jchem-microservices_developer-guide.html
  - type: Documentation
    url: https://docs.chemaxon.com/latest/compound-registration_api-documentation.html
  - type: JSONSchema
    url: json-schema/chemaxon-reaction-fragmentation-response-schema.json
  - type: JSONSchema
    url: json-schema/chemaxon-markush-reaction-fragmentation-response-schema.json
  - type: JSONSchema
    url: json-schema/chemaxon-markush-fragmentation-response-schema.json
- aid: chemaxon:chemaxon-json-converter-api
  name: Chemaxon JSON Converter API
  description: The JSON Converter API from Chemaxon — 2 operation(s) for json converter.
  humanURL: https://jchem-microservices.chemaxon.com/jws-calculations/api/index.html
  baseURL: https://jchem-microservices.chemaxon.com/jws-calculations
  tags:
  - JSON Converter
  properties:
  - type: OpenAPI
    url: openapi/chemaxon-json-converter-api-openapi.yml
  - type: Documentation
    url: https://docs.chemaxon.com/latest/jchem-microservices_developer-guide.html
  - type: Documentation
    url: https://docs.chemaxon.com/latest/compound-registration_api-documentation.html
- aid: chemaxon:chemaxon-markush-api
  name: Chemaxon Markush API
  description: The Markush API from Chemaxon — 1 operation(s) for markush.
  humanURL: https://jchem-microservices.chemaxon.com/jws-calculations/api/index.html
  baseURL: https://jchem-microservices.chemaxon.com/jws-markush
  tags:
  - Markush
  properties:
  - type: OpenAPI
    url: openapi/chemaxon-markush-api-openapi.yml
  - type: Documentation
    url: https://docs.chemaxon.com/latest/jchem-microservices_developer-guide.html
  - type: JSONSchema
    url: json-schema/chemaxon-enumeration-request-schema.json
  - type: Documentation
    url: https://docs.chemaxon.com/latest/compound-registration_api-documentation.html
- aid: chemaxon:chemaxon-molecule-cleaner-api
  name: Chemaxon Molecule Cleaner API
  description: The Molecule Cleaner API from Chemaxon — 1 operation(s) for molecule cleaner.
  humanURL: https://jchem-microservices.chemaxon.com/jws-calculations/api/index.html
  baseURL: https://jchem-microservices.chemaxon.com/structure-manipulation
  tags:
  - Molecule Cleaner
  properties:
  - type: OpenAPI
    url: openapi/chemaxon-molecule-cleaner-api-openapi.yml
  - type: Documentation
    url: https://docs.chemaxon.com/latest/jchem-microservices_developer-guide.html
  - type: Documentation
    url: https://docs.chemaxon.com/latest/compound-registration_api-documentation.html
- aid: chemaxon:chemaxon-molecule-format-converter-api
  name: Chemaxon Molecule format converter API
  description: The Molecule format converter API from Chemaxon — 13 operation(s) for molecule format converter.
  humanURL: https://jchem-microservices.chemaxon.com/jws-calculations/api/index.html
  baseURL: https://jchem-microservices.chemaxon.com/jwsio
  tags:
  - Molecule format converter
  properties:
  - type: OpenAPI
    url: openapi/chemaxon-molecule-format-converter-api-openapi.yml
  - type: Documentation
    url: https://docs.chemaxon.com/latest/jchem-microservices_developer-guide.html
  - type: JSONSchema
    url: json-schema/chemaxon-mol-splitter-request-schema.json
  - type: JSONSchema
    url: json-schema/chemaxon-batch-mol-convert-request-schema.json
  - type: JSONSchema
    url: json-schema/chemaxon-mol-with-properties-appender-request-schema.json
  - type: JSONSchema
    url: json-schema/chemaxon-mol-appender-request-schema.json
  - type: JSONSchema
    url: json-schema/chemaxon-mol-convert-request-schema.json
  - type: JSONSchema
    url: json-schema/chemaxon-batch-mol-convert-response-element-schema.json
  - type: Documentation
    url: https://docs.chemaxon.com/latest/compound-registration_api-documentation.html
- aid: chemaxon:chemaxon-molecule-standardizer-api
  name: Chemaxon Molecule Standardizer API
  description: The Molecule Standardizer API from Chemaxon — 4 operation(s) for molecule standardizer.
  humanURL: https://jchem-microservices.chemaxon.com/jws-calculations/api/index.html
  baseURL: https://jchem-microservices.chemaxon.com/structure-manipulation
  tags:
  - Molecule Standardizer
  properties:
  - type: OpenAPI
    url: openapi/chemaxon-molecule-standardizer-api-openapi.yml
  - type: Documentation
    url: https://docs.chemaxon.com/latest/jchem-microservices_developer-guide.html
  - type: JSONSchema
    url: json-schema/chemaxon-hydrogenizer-request-schema.json
  - type: JSONSchema
    url: json-schema/chemaxon-aromatizer-request-schema.json
  - type: Documentation
    url: https://docs.chemaxon.com/latest/compound-registration_api-documentation.html
- aid: chemaxon:chemaxon-molecule-type-information-api
  name: Chemaxon Molecule type information API
  description: Use this service to get information about the molecule types. These types specify what to do with a structure
    during search. You can fine tune the search logic with different aromatization, tautomerization, standardization, fingerprint
    calculation settings, etc. You may define types in application.properties before starting the service.
  humanURL: https://jchem-microservices.chemaxon.com/jws-calculations/api/index.html
  baseURL: https://jchem-microservices.chemaxon.com/jwsdb
  tags:
  - Molecule type information
  properties:
  - type: OpenAPI
    url: openapi/chemaxon-molecule-type-information-api-openapi.yml
  - type: Documentation
    url: https://docs.chemaxon.com/latest/jchem-microservices_developer-guide.html
  - type: JSONSchema
    url: json-schema/chemaxon-molecule-type-response-schema.json
  - type: Documentation
    url: https://docs.chemaxon.com/latest/compound-registration_api-documentation.html
- aid: chemaxon:chemaxon-multistep-reaction-controller-api
  name: Chemaxon Multistep reaction controller API
  description: The Multistep reaction controller API from Chemaxon — 2 operation(s) for multistep reaction controller.
  humanURL: https://jchem-microservices.chemaxon.com/jws-calculations/api/index.html
  baseURL: https://jchem-microservices.chemaxon.com/structure-manipulation
  tags:
  - Multistep reaction controller
  properties:
  - type: OpenAPI
    url: openapi/chemaxon-multistep-reaction-controller-api-openapi.yml
  - type: Documentation
    url: https://docs.chemaxon.com/latest/jchem-microservices_developer-guide.html
  - type: JSONSchema
    url: json-schema/chemaxon-multistep-reaction-decomposer-request-schema.json
  - type: JSONSchema
    url: json-schema/chemaxon-multistep-reaction-request-schema.json
  - type: Documentation
    url: https://docs.chemaxon.com/latest/compound-registration_api-documentation.html
- aid: chemaxon:chemaxon-r-group-decomposition-api
  name: Chemaxon R-group decomposition API
  description: Use this controller to create r-group decompositions of targets for given query.
  humanURL: https://jchem-microservices.chemaxon.com/jws-calculations/api/index.html
  baseURL: https://jchem-microservices.chemaxon.com/structure-manipulation
  tags:
  - R-group decomposition
  properties:
  - type: OpenAPI
    url: openapi/chemaxon-r-group-decomposition-api-openapi.yml
  - type: Documentation
    url: https://docs.chemaxon.com/latest/jchem-microservices_developer-guide.html
  - type: JSONSchema
    url: json-schema/chemaxon-rgroup-decomposer-request-schema.json
  - type: Documentation
    url: https://docs.chemaxon.com/latest/compound-registration_api-documentation.html
- aid: chemaxon:chemaxon-reaction-converter-api
  name: Chemaxon Reaction Converter API
  description: The Reaction Converter API from Chemaxon — 1 operation(s) for reaction converter.
  humanURL: https://jchem-microservices.chemaxon.com/jws-calculations/api/index.html
  baseURL: https://jchem-microservices.chemaxon.com/structure-manipulation
  tags:
  - Reaction Converter
  properties:
  - type: OpenAPI
    url: openapi/chemaxon-reaction-converter-api-openapi.yml
  - type: Documentation
    url: https://docs.chemaxon.com/latest/jchem-microservices_developer-guide.html
  - type: Documentation
    url: https://docs.chemaxon.com/latest/compound-registration_api-documentation.html
  - type: JSONSchema
    url: json-schema/chemaxon-reaction-converter-request-schema.json
  - type: JSONSchema
    url: json-schema/chemaxon-mol-convert-response-schema.json
- aid: chemaxon:chemaxon-reactor-api
  name: Chemaxon Reactor API
  description: The Reactor API from Chemaxon — 2 operation(s) for reactor.
  humanURL: https://jchem-microservices.chemaxon.com/jws-calculations/api/index.html
  baseURL: https://jchem-microservices.chemaxon.com/jws-reactor
  tags:
  - Reactors
  tags_raw:
  - Reactor
  properties:
  - type: OpenAPI
    url: openapi/chemaxon-reactor-api-openapi.yml
  - type: Documentation
    url: https://docs.chemaxon.com/latest/jchem-microservices_developer-guide.html
  - type: JSONSchema
    url: json-schema/chemaxon-reaction-request-combinatorial-request-options-schema.json
  - type: JSONSchema
    url: json-schema/chemaxon-reaction-request-react-request-options-schema.json
  - type: JSONSchema
    url: json-schema/chemaxon-reactor-response-schema.json
  - type: Documentation
    url: https://docs.chemaxon.com/latest/compound-registration_api-documentation.html
- aid: chemaxon:chemaxon-reactor-work-queue-handler-controller-api
  name: Chemaxon Reactor Work queue handler controller API
  description: Use this controller to handle async and background tasks
  humanURL: https://jchem-microservices.chemaxon.com/jws-calculations/api/index.html
  baseURL: https://jchem-microservices.chemaxon.com/jws-taskmanager
  tags:
  - Reactor Work queue handler controller
  properties:
  - type: OpenAPI
    url: openapi/chemaxon-reactor-work-queue-handler-controller-api-openapi.yml
  - type: Documentation
    url: https://docs.chemaxon.com/latest/jchem-microservices_developer-guide.html
  - type: JSONSchema
    url: json-schema/chemaxon-reactor-task-descriptor-schema.json
  - type: JSONSchema
    url: json-schema/chemaxon-monitor-response-schema.json
  - type: JSONSchema
    url: json-schema/chemaxon-reactor-task-creation-request-schema.json
  - type: JSONSchema
    url: json-schema/chemaxon-reactor-add-structures-request-schema.json


# --- truncated at 32 KB (38 KB total) ---
# Full source: https://artifacts.apis.io/chemaxon/apis.yml

Chemaxon API — frequently asked questions

Does Chemaxon have an API?

Yes. APIs.io lists 40 APIs from Chemaxon, including Chemaxon Amendment API, Chemaxon Audit API and Chemaxon Auto Mapper API, and 37 more.

Is there an OpenAPI specification for the Chemaxon API?

Yes. APIs.io indexes 40 OpenAPI specifications for Chemaxon, each linked for download from this page.

How do I authenticate with the Chemaxon API?

Chemaxon documents its authentication (4 schemes). The details are profiled on APIs.io as Chemaxon Authentication.

Is the Chemaxon API ready for AI agents?

Chemaxon has a Kin Score of 50.1 out of 100 (developing) and an Agent Readiness score of 43.7 (agent-ready), scored by API Evangelist on 2026-11-13.

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