Chemaxon

Chemaxon Bulk registration API

Bulk registration related operations

GitHub OpenAPI

Operations 4

POST /registrationService/bulkloader Bulk registers a molecule file (SDF or CSV) #
POST /registrationService/bulkloader/registerSubmissions Register selected submissions #
POST /registrationService/bulkloader/registerAll/{uploadId} Register all submissions of an upload #
GET /registrationService/bulkloader/statistics/{uploadId} Collects detailed statistics of an upload #

Documentation

📖
Documentation
https://docs.chemaxon.com/latest/jchem-microservices_developer-guide.html
📖
Documentation
https://docs.chemaxon.com/latest/compound-registration_api-documentation.html

Specifications

⚙
OpenAPI
https://artifacts.apis.io/chemaxon/openapi/chemaxon-bulk-registration-api-openapi.yml

Schemas & Data

📊
JSONSchema
https://artifacts.apis.io/chemaxon/json-schema/chemaxon-upload-submission-statistics-schema.json
📊
JSONSchema
https://artifacts.apis.io/chemaxon/json-schema/chemaxon-bulk-insert-request-schema.json
📊
JSONSchema
https://artifacts.apis.io/chemaxon/json-schema/chemaxon-bulkloader-response-schema.json

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OpenAPI Specification

chemaxon-bulk-registration-api-openapi.yml Raw ↑ 
openapi: 3.2.0
info:
  title: Chemaxon Bulk registration API
  version: 26.1.5-2610221056
  description: 'Operations tagged Bulk registration across 2 of this provider''s published API definitions: chemaxon-compound-registration-openapi.json, chemaxon-compound-registration-openapi.yml. Each path carries the servers of the definition it was published in.'
servers:
- url: /RegistryCxn/rest
tags:
- name: Bulk registration
  description: Bulk registration related operations
paths:
  /registrationService/bulkloader:
    post:
      tags:
      - Bulk registration
      summary: Bulk registers a molecule file (SDF or CSV)
      operationId: bulkRegister
      requestBody:
        content:
          multipart/form-data:
            schema:
              type: object
              properties:
                sdfile:
                  type: string
                  format: binary
                request:
                  $ref: '#/components/schemas/BulkInsertRequest'
              required:
              - request
              - sdfile
      responses:
        '400':
          description: Bad Request
          content:
            '*/*':
              schema:
                $ref: '#/components/schemas/ErrorMessage'
        '200':
          description: OK
          content:
            application/json:
              schema:
                $ref: '#/components/schemas/BulkloaderResponse'
        '201':
          description: Created
        '401':
          description: Unauthorized
        '403':
          description: Forbidden
        '404':
          description: Not Found
    servers:
    - url: /RegistryCxn/rest
  /registrationService/bulkloader/registerSubmissions:
    post:
      tags:
      - Bulk registration
      summary: Register selected submissions
      operationId: bulkRegisterSubmissions
      parameters:
      - name: submissionIds
        in: query
        required: true
        schema:
          type: array
          items:
            type: integer
            format: int32
      responses:
        '400':
          description: Bad Request
          content:
            '*/*':
              schema:
                $ref: '#/components/schemas/ErrorMessage'
        '200':
          description: OK
          content:
            '*/*':
              schema:
                $ref: '#/components/schemas/BulkloaderResponse'
        '201':
          description: Created
        '401':
          description: Unauthorized
        '403':
          description: Forbidden
        '404':
          description: Not Found
    servers:
    - url: /RegistryCxn/rest
  /registrationService/bulkloader/registerAll/{uploadId}:
    post:
      tags:
      - Bulk registration
      summary: Register all submissions of an upload
      operationId: bulkRegisterAll
      parameters:
      - name: uploadId
        in: path
        required: true
        schema:
          type: integer
          format: int64
      responses:
        '400':
          description: Bad Request
          content:
            '*/*':
              schema:
                $ref: '#/components/schemas/ErrorMessage'
        '200':
          description: OK
        '201':
          description: Created
        '401':
          description: Unauthorized
        '403':
          description: Forbidden
        '404':
          description: Not Found
    servers:
    - url: /RegistryCxn/rest
  /registrationService/bulkloader/statistics/{uploadId}:
    get:
      tags:
      - Bulk registration
      summary: Collects detailed statistics of an upload
      operationId: bulkRegisterDetails
      parameters:
      - name: uploadId
        in: path
        required: true
        schema:
          type: integer
          format: int64
      responses:
        '400':
          description: Bad Request
          content:
            '*/*':
              schema:
                $ref: '#/components/schemas/ErrorMessage'
        '200':
          description: OK
          content:
            '*/*':
              schema:
                $ref: '#/components/schemas/UploadSubmissionStatistics'
        '401':
          description: Unauthorized
        '403':
          description: Forbidden
        '404':
          description: Not Found
    servers:
    - url: /RegistryCxn/rest
components:
  schemas:
    SystemSwitchersWrapper:
      type: object
      properties:
        sysSwitchers:
          type: object
          additionalProperties:
            type: boolean
    StructureCheckerSwitcher:
      type: object
      properties:
        structureChecker:
          $ref: '#/components/schemas/StructureCheckerItem'
          xml:
            name: StructureChecker
        fixMode:
          type: string
          enum:
          - ASK
          - FIX
          - DO_NOT_FIX
          xml:
            name: FixMode
        fixer:
          $ref: '#/components/schemas/FixerItem'
          xml:
            name: SelectedFixer
        fixerOptions:
          type: array
          items:
            $ref: '#/components/schemas/FixerItem'
          xml:
            name: FixerOptions
    StructureCheckerItem:
      type: object
      properties:
        structureCheckerId:
          type: string
          xml:
            name: StructureCheckerId
        structureCheckerName:
          type: string
          xml:
            name: StructureCheckerName
    BulkloaderResponse:
      type: object
      properties:
        uploadId:
          type: integer
          format: int32
        library:
          type: string
        recordCount:
          type: integer
          format: int64
    ErrorMessage:
      type: object
      properties:
        errorCode:
          type: string
          enum:
          - UNKNOWN
          - UNAUTHORIZED
          - APPLICATION_ERROR
          - BAD_REQUEST
          - NOT_FOUND
        message:
          type: string
        detail:
          type: string
    UploadSubmissionStatistics:
      type: object
      properties:
        uploadId:
          type: integer
          format: int32
        fileName:
          type: string
        library:
          type: string
        uploadedOn:
          type: string
          format: date-time
        total:
          type: integer
          format: int32
        processed:
          type: integer
          format: int32
        status:
          type: string
          enum:
          - IN_PROGRESS
          - DELIVERED
          - STOPPED
          - DELETED
          - PAUSED
        errorCounts:
          $ref: '#/components/schemas/ErrorCounts'
        uploadedBy:
          $ref: '#/components/schemas/BriefUser'
        registered:
          type: integer
          format: int32
        deleted:
          type: integer
          format: int32
        submissions:
          type: array
          items:
            $ref: '#/components/schemas/SubmissionStatistics'
        registering:
          type: boolean
    BriefUser:
      type: object
      properties:
        userId:
          type: integer
          format: int32
        displayName:
          type: string
        source:
          type: string
          enum:
          - DB
          - AD
          - LDAP
          - SAMLSSO
          - OAUTH2
          - UNKNOWN
    SubmissionStatistics:
      type: object
      properties:
        label:
          type: string
        count:
          type: integer
          format: int32
        tag:
          type: string
        submissionStatus:
          type: string
    FieldId:
      type: object
      properties:
        fieldName:
          type: string
          example: cst
        additional:
          type: boolean
          description: True in case of additional data field, false otherwise
      required:
      - additional
      - fieldName
    FieldMapping:
      type: object
      properties:
        externalFieldName:
          type: string
        fieldId:
          $ref: '#/components/schemas/FieldId'
        defaultValue:
          type: string
    FileSettings:
      type: object
      properties:
        type:
          type: string
          enum:
          - AUTO
          - MOLECULE
          - CSV
        rowDelimiter:
          type: string
        fieldDelimiter:
          type: string
        multiValueDelimiter:
          type: string
        structureField:
          type: string
        containsHeader:
          type: boolean
        processIdBasedFields:
          type: boolean
    BulkInsertRequest:
      type: object
      description: A JSON object containing field mappings, system switchers and registration properties
      properties:
        source:
          type: string
        library:
          type: string
        fieldMappings:
          type: array
          items:
            $ref: '#/components/schemas/FieldMapping'
        settings:
          $ref: '#/components/schemas/FileSettings'
        sysSwitchers:
          $ref: '#/components/schemas/SystemSwitchersWrapper'
        preregistration:
          type: boolean
        strCheckerSwitchers:
          type: array
          items:
            $ref: '#/components/schemas/StructureCheckerSwitcher'
        entityType:
          type: string
          enum:
          - SINGLE
          - PEPTIDE
    FixerItem:
      type: object
      properties:
        fixerClassName:
          type: string
          xml:
            name: FixerClassName
        fixerName:
          type: string
          xml:
            name: FixerName
    ErrorCounts:
      type: object
      properties:
        structural:
          type: integer
          format: int32
        validation:
          type: integer
          format: int32
        match:
          type: integer
          format: int32
        operational:
          type: integer
          format: int32
        numberOfErrors:
          type: integer
          format: int32
x-refined-from:
- chemaxon-compound-registration-openapi.json
- chemaxon-compound-registration-openapi.yml