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Efetch Abstracts
Efetch Abstracts
EFetch example: Retrieve abstracts for specific PubMed articles in JSON-compatible format
biomedical life science research literature citations abstracts MeSH genomics PubMed NCBI
Efetch Abstracts is an example object payload from PubMed, with 4 top-level fields. It illustrates the shape of data this provider's APIs accept or return.
Top-level fields
description request notes response_structure
Example Payload
{
"description": "EFetch example: Retrieve abstracts for specific PubMed articles in JSON-compatible format",
"request": {
"method": "GET",
"url": "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi",
"parameters": {
"db": "pubmed",
"id": "36328499,36328500",
"rettype": "abstract",
"retmode": "xml"
}
},
"notes": "EFetch returns XML for PubMed articles. The rettype=abstract with retmode=xml returns PubmedArticleSet XML. Use rettype=medline and retmode=text for MEDLINE flat file format. The response below shows a simplified representation of the XML structure.",
"response_structure": {
"PubmedArticleSet": {
"PubmedArticle": [
{
"MedlineCitation": {
"PMID": "36328499",
"Article": {
"Journal": {
"Title": "Nature",
"JournalIssue": {
"Volume": "612",
"Issue": "7941",
"PubDate": { "Year": "2022", "Month": "Dec" }
}
},
"ArticleTitle": "Example article title about CRISPR gene editing",
"Abstract": {
"AbstractText": "Abstract text describing the study methods, results, and conclusions."
},
"AuthorList": {
"Author": [
{
"LastName": "Smith",
"ForeName": "Jane",
"Initials": "J",
"AffiliationInfo": {
"Affiliation": "Department of Genetics, University of California, Berkeley, CA, USA"
}
}
]
},
"Language": "eng",
"PublicationTypeList": {
"PublicationType": ["Journal Article", "Research Support, N.I.H., Extramural"]
},
"ArticleIdList": {
"ArticleId": [
{ "IdType": "pubmed", "value": "36328499" },
{ "IdType": "doi", "value": "10.1038/s41586-022-05543-x" },
{ "IdType": "pmc", "value": "PMC9876543" }
]
}
},
"MeshHeadingList": {
"MeshHeading": [
{
"DescriptorName": "CRISPR-Cas Systems",
"MajorTopicYN": "Y"
},
{
"DescriptorName": "Gene Editing",
"MajorTopicYN": "Y"
}
]
}
}
}
]
}
}
}