UCSC Genomic Data

UCSC Genomic Data Search API

Genome browser search

GitHub OpenAPI

Operations 1

GET /search Search Genome Browser #

Documentation

📖
Documentation
https://genome.ucsc.edu/goldenPath/help/api.html

Specifications

⚙
OpenAPI
https://raw.githubusercontent.com/api-evangelist/ucsc-genomic-data/refs/heads/main/openapi/ucsc-genomic-data-search-api-openapi.yml

Schemas & Data

📊
JSONSchema
https://raw.githubusercontent.com/api-evangelist/ucsc-genomic-data/refs/heads/main/json-schema/ucsc-genomic-data-sequence-schema.json
📊
JSONSchema
https://raw.githubusercontent.com/api-evangelist/ucsc-genomic-data/refs/heads/main/json-schema/ucsc-genomic-data-track-schema.json

Other Resources

🔗
Examples
https://raw.githubusercontent.com/api-evangelist/ucsc-genomic-data/refs/heads/main/examples/ucsc-get-dna-sequence-example.json
🔗
Examples
https://raw.githubusercontent.com/api-evangelist/ucsc-genomic-data/refs/heads/main/examples/ucsc-list-tracks-example.json

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OpenAPI Specification

ucsc-genomic-data-search-api-openapi.yml Raw ↑ 
openapi: 3.2.0
info:
  title: UCSC Genome Browser REST Genomes Search API
  description: The UCSC Genome Browser REST API provides programmatic access to genomic data, sequences, annotation tracks, genome assemblies, and track hubs. All endpoints return JSON and require no authentication. Rate limiting of one request per second is recommended to avoid the botDelay system.
  version: 1.0.0
  contact:
    name: UCSC Genome Browser
    url: https://genome.ucsc.edu
servers:
- url: https://api.genome.ucsc.edu
  description: UCSC Primary API Server
- url: https://genome-euro.ucsc.edu/cgi-bin/hubApi
  description: UCSC Europe Mirror
- url: https://genome-asia.ucsc.edu/cgi-bin/hubApi
  description: UCSC Asia Mirror
tags:
- name: Search
  description: Genome browser search
paths:
  /search:
    get:
      operationId: searchGenomeBrowser
      summary: Search Genome Browser
      description: Searches across track data, names, and descriptions in the Genome Browser.
      tags:
      - Search
      parameters:
      - name: search
        in: query
        required: true
        schema:
          type: string
        description: Search query string.
      - name: genome
        in: query
        required: true
        schema:
          type: string
        description: Genome assembly identifier to search within.
      - name: categories
        in: query
        required: false
        schema:
          type: string
        description: Restrict search scope (e.g., helpDocs, publicHubs, trackDb).
      responses:
        '200':
          description: Search results.
          content:
            application/json:
              schema:
                type: object