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OpenAPI Specification
openapi: 3.2.0
info:
contact:
email: info@seqera.io
url: https://seqera.io
description: Seqera Platform services API
title: Seqera actions Pipelines API
version: 1.181.0
servers:
- url: https://api.cloud.seqera.io
description: Base URL declared by the provider in apis.yml (roadmap#122).
tags:
- description: Pipelines
name: pipelines
paths:
/pipelines:
get:
description: Lists all available pipelines in a user context, enriched by `attributes`. Append `workspaceId` to list pipelines in a workspace context.
operationId: ListPipelines
parameters:
- description: 'Additional attribute values to include in the response (`labels`, `optimized` status, `computeEnv`). Returns an empty value (`labels: null`, etc.) if omitted.'
explode: false
in: query
name: attributes
schema:
items:
$ref: '#/components/schemas/PipelineQueryAttribute'
type: array
- description: Workspace numeric identifier
in: query
name: workspaceId
schema:
format: int64
type: integer
- description: Pagination max results
in: query
name: max
schema:
format: int32
type: integer
- description: Pagination offset
in: query
name: offset
schema:
format: int32
type: integer
- description: Sort field (`NAME` by default)
in: query
name: sortBy
schema:
$ref: '#/components/schemas/PipelineListParams.SortBy'
- description: Sort direction (`ASCENDING` by default)
in: query
name: sortDir
schema:
$ref: '#/components/schemas/PipelineListParams.SortDir'
- description: Filter search parameter
in: query
name: search
schema:
type: string
- description: Filter visibility parameter
in: query
name: visibility
schema:
type: string
responses:
'200':
content:
application/json:
schema:
$ref: '#/components/schemas/ListPipelinesResponse'
description: OK
'400':
content:
application/json:
schema:
$ref: '#/components/schemas/ErrorResponse'
description: Bad request
'403':
description: Operation not allowed
security:
- BearerAuth: []
summary: List pipelines
tags:
- pipelines
post:
description: Creates a new pipeline in a user context. Append `?workspaceId` to create the pipeline in a workspace context.
operationId: CreatePipeline
parameters:
- description: Workspace numeric identifier
in: query
name: workspaceId
schema:
format: int64
type: integer
requestBody:
content:
application/json:
schema:
$ref: '#/components/schemas/CreatePipelineRequest'
description: Pipeline creation request
required: true
responses:
'200':
content:
application/json:
schema:
$ref: '#/components/schemas/CreatePipelineResponse'
description: OK
'400':
content:
application/json:
schema:
$ref: '#/components/schemas/ErrorResponse'
description: Bad request
'403':
description: Operation not allowed
'409':
content:
application/json:
schema:
$ref: '#/components/schemas/ErrorResponse'
description: Duplicate element
security:
- BearerAuth: []
summary: Create pipeline
tags:
- pipelines
/pipelines/info:
get:
description: Retrieves the details of a remote Nextflow pipeline Git repository. Append the repository name or full URL with `?name`.
operationId: DescribePipelineRepository
parameters:
- description: Pipeline repository name or URL
in: query
name: name
schema:
type: string
- description: Pipeline revision
in: query
name: revision
schema:
type: string
- description: Workspace numeric identifier
in: query
name: workspaceId
schema:
format: int64
type: integer
- description: Pipeline alternative main.nf
in: query
name: mainScript
schema:
type: string
responses:
'200':
content:
application/json:
schema:
$ref: '#/components/schemas/DescribePipelineInfoResponse'
description: OK
'400':
content:
application/json:
schema:
$ref: '#/components/schemas/ErrorResponse'
description: Bad request
'403':
description: Operation not allowed
security:
- BearerAuth: []
summary: Describe remote pipeline repository
tags:
- pipelines
/pipelines/repositories:
get:
description: Lists known Nextflow pipeline Git repositories, extracted from existing runs. Append `?workspaceId` to list repositories in a workspace context.
operationId: ListPipelineRepositories
parameters:
- description: Workspace numeric identifier
in: query
name: workspaceId
schema:
format: int64
type: integer
responses:
'200':
content:
application/json:
schema:
$ref: '#/components/schemas/ListPipelineInfoResponse'
description: OK
'400':
content:
application/json:
schema:
$ref: '#/components/schemas/ErrorResponse'
description: Bad request
'403':
description: Operation not allowed
security:
- BearerAuth: []
summary: List user pipeline repositories
tags:
- pipelines
/pipelines/validate:
get:
description: Confirms the validity of the given pipeline `name` in a user context. Append `?name=<your_pipeline_name>`. Append `?workspaceId` to validate the name in a workspace context.
operationId: ValidatePipelineName
parameters:
- description: Workspace numeric identifier
in: query
name: workspaceId
schema:
format: int64
type: integer
- description: Organization numeric identifier
in: query
name: orgId
schema:
format: int64
type: integer
- description: Pipeline name to validate
in: query
name: name
schema:
type: string
responses:
'204':
description: OK - No content
'400':
content:
application/json:
schema:
$ref: '#/components/schemas/ErrorResponse'
description: Bad request
'403':
description: Operation not allowed
'409':
content:
application/json:
schema:
$ref: '#/components/schemas/ErrorResponse'
description: Duplicate element
security:
- BearerAuth: []
summary: Validate pipeline name
tags:
- pipelines
/pipelines/{pipelineId}:
delete:
description: Deletes the pipeline identified by the given `pipelineId`.
operationId: DeletePipeline
parameters:
- description: Pipeline numeric identifier
in: path
name: pipelineId
required: true
schema:
format: int64
type: integer
- description: Workspace numeric identifier
in: query
name: workspaceId
schema:
format: int64
type: integer
responses:
'204':
description: OK - No content
'400':
content:
application/json:
schema:
$ref: '#/components/schemas/ErrorResponse'
description: Bad request
'403':
description: Operation not allowed
security:
- BearerAuth: []
summary: Delete pipeline
tags:
- pipelines
get:
description: Retrieves the details of the pipeline identified by the given `pipelineId`, enriched by `attributes`.
operationId: DescribePipeline
parameters:
- description: Pipeline numeric identifier
in: path
name: pipelineId
required: true
schema:
format: int64
type: integer
- description: 'Additional attribute values to include in the response (`labels`, `optimized` status, `computeEnv`). Returns an empty value (`labels: null`, etc.) if omitted.'
explode: false
in: query
name: attributes
schema:
items:
$ref: '#/components/schemas/PipelineQueryAttribute'
type: array
- description: Workspace numeric identifier
in: query
name: workspaceId
schema:
format: int64
type: integer
- description: Source workspace numeric identifier
in: query
name: sourceWorkspaceId
required: false
schema:
format: int64
type:
- integer
- 'null'
responses:
'200':
content:
application/json:
schema:
$ref: '#/components/schemas/DescribePipelineResponse'
description: OK
'400':
content:
application/json:
schema:
$ref: '#/components/schemas/ErrorResponse'
description: Bad request
'403':
description: Operation not allowed
security:
- BearerAuth: []
summary: Describe pipeline
tags:
- pipelines
put:
description: "Updates the details of the pipeline identified by the given `pipelineId`.\n **Note**: If `labelIds` is `null`, empty, or omitted, existing pipeline labels are removed.\n Include `labelIds: [<label-id-1>,<label-id-2>]` to override existing labels. Labels to be preserved must be included.\n To append a list of labels to multiple pipelines, use `/pipelines/labels/add`."
operationId: UpdatePipeline
parameters:
- description: Pipeline numeric identifier
in: path
name: pipelineId
required: true
schema:
format: int64
type: integer
- description: Workspace numeric identifier
in: query
name: workspaceId
schema:
format: int64
type: integer
requestBody:
content:
application/json:
schema:
$ref: '#/components/schemas/UpdatePipelineRequest'
description: Pipeline update request
required: true
responses:
'200':
content:
application/json:
schema:
$ref: '#/components/schemas/UpdatePipelineResponse'
description: OK
'400':
content:
application/json:
schema:
$ref: '#/components/schemas/ErrorResponse'
description: Bad request
'403':
description: Operation not allowed
'409':
content:
application/json:
schema:
$ref: '#/components/schemas/ErrorResponse'
description: Duplicate element
security:
- BearerAuth: []
summary: Update pipeline (default version)
tags:
- pipelines
/pipelines/{pipelineId}/launch:
get:
description: Retrieves the launch details of the pipeline identified by the given `pipelineId`.
operationId: DescribePipelineLaunch
parameters:
- description: Pipeline numeric identifier
in: path
name: pipelineId
required: true
schema:
format: int64
type: integer
- description: Workspace numeric identifier
in: query
name: workspaceId
schema:
format: int64
type: integer
- description: Source workspace numeric identifier
in: query
name: sourceWorkspaceId
required: false
schema:
format: int64
type:
- integer
- 'null'
- description: Pipeline version identifier
in: query
name: versionId
required: false
schema:
type: string
responses:
'200':
content:
application/json:
schema:
$ref: '#/components/schemas/DescribeLaunchResponse'
description: OK
'400':
content:
application/json:
schema:
$ref: '#/components/schemas/ErrorResponse'
description: Bad request
'403':
description: Operation not allowed
security:
- BearerAuth: []
summary: Describe pipeline launch
tags:
- pipelines
/pipelines/{pipelineId}/schema:
get:
description: "Retrieves the pipeline schema of the pipeline identified by the given `pipelineId`, enriched by `attributes`.\n `200 - OK` responses include the pipeline schema.\n `204 - OK` responses indicate a successful request, with no saved schema found for the given pipeline ID.\n "
operationId: DescribePipelineSchema
parameters:
- description: Pipeline numeric identifier
in: path
name: pipelineId
required: true
schema:
format: int64
type: integer
- description: Workspace numeric identifier
in: query
name: workspaceId
schema:
format: int64
type: integer
- description: Source workspace numeric identifier
in: query
name: sourceWorkspaceId
required: false
schema:
format: int64
type:
- integer
- 'null'
- description: 'Additional attribute values to include in the response: `schema` returns the pipeline schema, `params` returns the pipeline config. Returns all if `attributes` is omitted.'
explode: false
in: query
name: attributes
schema:
items:
$ref: '#/components/schemas/PipelineSchemaAttributes'
type: array
- description: Pipeline version identifier
in: query
name: versionId
required: false
schema:
type: string
responses:
'200':
content:
application/json:
schema:
$ref: '#/components/schemas/PipelineSchemaResponse'
description: OK
'204':
description: Request OK - No schema found for given pipeline ID
'400':
content:
application/json:
schema:
$ref: '#/components/schemas/ErrorResponse'
description: Bad request
'403':
description: Operation not allowed
security:
- BearerAuth: []
summary: Describe pipeline schema
tags:
- pipelines
components:
schemas:
AzBatchConfig:
allOf:
- $ref: '#/components/schemas/ComputeConfig'
- properties:
autoPoolMode:
deprecated: true
type: boolean
deleteJobsOnCompletion:
allOf:
- $ref: '#/components/schemas/JobCleanupPolicy'
readOnly: true
deleteJobsOnCompletionEnabled:
type:
- boolean
- 'null'
deletePoolsOnCompletion:
type: boolean
deleteTasksOnCompletion:
type:
- boolean
- 'null'
forge:
$ref: '#/components/schemas/AzBatchForgeConfig'
fusion2Enabled:
type: boolean
headJobCpus:
description: Number of CPU slots reserved on the head pool VM for the Nextflow head job. Defaults to 1 so multiple head jobs can share a head pool VM; increase to dedicate more CPU and memory to each head job.
example: 1
format: int32
type:
- integer
- 'null'
headJobMemoryMb:
description: Memory in MiB reserved for the Nextflow head job container. When omitted, the value is derived from the head pool VM size as the per-slot share (vmMemory / vmCpus) multiplied by the requested slot count.
example: 4096
format: int32
type:
- integer
- 'null'
headPool:
type: string
jobMaxWallClockTime:
description: 'Maximum wall clock time for Azure Batch jobs before automatic termination. Accepts human-readable duration syntax (e.g., ''7d'', ''1d1h1m''). Defaults to 7d when not specified. Maximum: 180 days.'
example: 7d
type:
- string
- 'null'
managedIdentityClientId:
type:
- string
- 'null'
managedIdentityHeadResourceId:
type:
- string
- 'null'
managedIdentityPoolClientId:
type:
- string
- 'null'
managedIdentityPoolResourceId:
type:
- string
- 'null'
region:
type: string
subnetId:
description: Azure VNet subnet resource ID for private network isolation. Requires Entra (service principal) credentials.
example: /subscriptions/00000000-0000-0000-0000-000000000000/resourceGroups/myRg/providers/Microsoft.Network/virtualNetworks/myVnet/subnets/mySubnet
type:
- string
- 'null'
terminateJobsOnCompletion:
type:
- boolean
- 'null'
tokenDuration:
type: string
waveEnabled:
type: boolean
workerPool:
type: string
type: object
title: Azure Batch configuration
type: object
GoogleLifeSciencesConfig:
allOf:
- $ref: '#/components/schemas/ComputeConfig'
- properties:
bootDiskSizeGb:
format: int32
type: integer
copyImage:
type: string
debugMode:
format: int32
type: integer
headJobCpus:
format: int32
type: integer
headJobMemoryMb:
format: int32
type: integer
labels:
additionalProperties:
type: string
type: object
location:
type: string
nfsMount:
type: string
nfsTarget:
type: string
preemptible:
type: boolean
projectId:
type: string
region:
type: string
sshDaemon:
type: boolean
sshImage:
type: string
usePrivateAddress:
type: boolean
zones:
items:
type: string
type: array
type: object
title: Google Life Sciences configuration (retired)
type: object
CreatePipelineResponse:
properties:
pipeline:
$ref: '#/components/schemas/PipelineDbDto'
type: object
DescribeLaunchResponse:
properties:
launch:
$ref: '#/components/schemas/LaunchDbDto'
type: object
SchedConfig.Pool:
properties:
desiredWarm:
description: Target number of idle VMs to keep warm. Bounds total warm-VM cost across all of this CE's pool clusters.
format: int32
type: integer
enabled:
description: Whether the warm pool is active for this CE. When false, the scheduler will not maintain idle VMs.
type: boolean
scaleToZeroSecs:
description: Seconds of inactivity after which the warm pool scales to zero. Set to 0 to never scale to zero.
format: int32
type: integer
type: object
LsfComputeConfig:
allOf:
- $ref: '#/components/schemas/AbstractGridConfig'
- properties:
perJobMemLimit:
type: boolean
perTaskReserve:
type: boolean
unitForLimits:
type: string
type: object
title: IBM LSF configuration
type: object
ComputeEnv.Status:
enum:
- CREATING
- AVAILABLE
- DISABLED
- DELETING
- ERRORED
- INVALID
- DELETED
type: string
PipelineQueryAttribute:
enum:
- optimized
- labels
- computeEnv
type: string
x-enum-varnames:
- optimized
- labels
- computeEnv
ForgeConfig:
properties:
allocStrategy:
enum:
- BEST_FIT
- BEST_FIT_PROGRESSIVE
- SPOT_CAPACITY_OPTIMIZED
- SPOT_PRICE_CAPACITY_OPTIMIZED
type: string
allowBuckets:
items:
type: string
type: array
arm64Enabled:
type: boolean
bidPercentage:
format: int32
type: integer
disposeOnDeletion:
type: boolean
dragenAmiId:
type: string
dragenEnabled:
type: boolean
dragenInstanceType:
type: string
ebsAutoScale:
type: boolean
ebsBlockSize:
format: int32
type: integer
ebsBootSize:
format: int32
type: integer
ec2KeyPair:
type: string
ecsConfig:
type: string
efsCreate:
type: boolean
efsId:
type: string
efsMount:
type: string
fargateHeadEnabled:
type: boolean
fsxMount:
type: string
fsxName:
type: string
fsxSize:
format: int32
type: integer
fusionEnabled:
type: boolean
gpuEnabled:
type: boolean
imageId:
type: string
instanceTypes:
items:
type: string
type: array
maxCpus:
format: int32
type: integer
minCpus:
format: int32
type: integer
securityGroups:
items:
type: string
type: array
subnets:
items:
type: string
type: array
type:
enum:
- SPOT
- EC2
type: string
vpcId:
type: string
type: object
AltairPbsComputeConfig:
allOf:
- $ref: '#/components/schemas/AbstractGridConfig'
title: Altair PBS configuration
type: object
DescribePipelineResponse:
properties:
pipeline:
$ref: '#/components/schemas/PipelineDbDto'
type: object
DescribePipelineInfoResponse:
properties:
pipelineInfo:
$ref: '#/components/schemas/PipelineInfo'
type: object
ListPipelinesResponse:
properties:
pipelines:
items:
$ref: '#/components/schemas/PipelineDbDto'
type: array
totalSize:
format: int64
type: integer
type: object
LaunchDbDto:
properties:
commitId:
type: string
computeEnv:
$ref: '#/components/schemas/ComputeEnv_ComputeConfig_'
configProfiles:
items:
type: string
type: array
configText:
type: string
dateCreated:
format: date-time
type: string
entryName:
type: string
headJobCpus:
format: int32
type: integer
headJobMemoryMb:
format: int32
type: integer
id:
type: string
lastUpdated:
format: date-time
type: string
launchContainer:
type: string
mainScript:
type: string
optimizationId:
type: string
optimizationTargets:
type: string
outputDir:
description: Per-run output directory passed as Nextflow -output-dir (requires Nextflow 24.10.0 or later and workflow outputs syntax).
type:
- string
- 'null'
paramsText:
type: string
pipeline:
type: string
pipelineSchemaId:
format: int64
type: integer
postRunScript:
type: string
preRunScript:
type: string
pullLatest:
type: boolean
resume:
type: boolean
resumeLaunchId:
type: string
revision:
type: string
runName:
type: string
schemaName:
type: string
sessionId:
type: string
stubRun:
type: boolean
syntaxParser:
enum:
- v1
- v2
type:
- string
- 'null'
towerConfig:
type: string
userSecrets:
items:
type: string
type: array
workDir:
type: string
workspaceId:
format: int64
type: integer
workspaceSecrets:
items:
type: string
type: array
type: object
LabelDbDto:
properties:
dateCreated:
format: date-time
type: string
id:
format: int64
type: integer
isDefault:
type: boolean
isDynamic:
type: boolean
isInterpolated:
type: boolean
name:
type: string
resource:
type: boolean
value:
type: string
type: object
AbstractGridConfig:
allOf:
- $ref: '#/components/schemas/ComputeConfig'
- properties:
computeQueue:
type: string
headJobOptions:
type: string
headQueue:
type: string
hostName:
type: string
launchDir:
type: string
maxQueueSize:
format: int32
type: integer
port:
format: int32
type: integer
propagateHeadJobOptions:
type: boolean
userName:
type: string
type: object
type: object
MoabComputeConfig:
allOf:
- $ref: '#/components/schemas/AbstractGridConfig'
title: Moab configuration
type: object
WfManifest:
properties:
author:
maxLength: 150
type: string
defaultBranch:
maxLength: 20
type: string
description:
maxLength: 1024
type: string
gitmodules:
maxLength: 150
type: string
homePage:
maxLength: 200
type: string
icon:
maxLength: 255
type: string
mainScript:
maxLength: 100
type: string
name:
maxLength: 150
type: string
nextflowVersion:
maxLength: 20
type: string
version:
maxLength: 20
type: string
type: object
PipelineVersionFullInfoDto:
properties:
creatorAvatarUrl:
type: string
creatorFirstName:
type: string
creatorLastName:
type: string
creatorUserId:
format: int64
type: integer
creatorUserName:
type: string
dateCreated:
format: date-time
type: string
hash:
type: string
id:
type: string
isDefault:
type: boolean
lastUpdated:
format: date-time
type: string
name:
type: string
type: object
SeqeraComputeConfig:
allOf:
- $ref: '#/components/schemas/ComputeConfig'
- properties:
defaultDataRetentionPolicy:
type: boolean
instanceTypeSize:
allOf:
- $ref: '#/components/schemas/SeqeraComputeCloudInstanceTypeSize'
description: Size of the Data Studios instance (SMALL, MEDIUM, LARGE)
region:
type: string
type: object
title: Seqera Compute configuration
type: object
PipelineSchemaResponse:
properties:
params:
type: string
schema:
type: string
required:
- schema
type: object
WorkflowLaunchRequest:
properties:
commitId:
type: string
computeEnvId:
type: string
configProfiles:
items:
type: string
type: array
configText:
type: string
dateCreated:
format: date-time
type: string
entryName:
type: string
headJobCpus:
format: int32
type: integer
headJobMemoryMb:
format: int32
type: integer
id:
type: string
labelIds:
items:
format: int64
type: integer
type: array
launchContainer:
type: string
mainScript:
type: string
optimizationId:
type: string
optimizationTargets:
type: string
outputDir:
description: Per-run output directory passed as Nextflow -output-dir (requires Nextflow 24.10.0 or later and workflow outputs syntax).
type:
- string
- 'null'
paramsText:
type: string
pipeline:
type: string
pipelineSchemaId:
format: int64
type: integer
postRunScript:
type: string
preRunScript:
type: string
pullLatest:
type: boolean
resume:
type: boolean
revision:
type: string
runName:
type: string
schemaName:
type: string
sessionId:
type: string
stubRun:
type: boolean
syntaxParser:
enum:
- v1
- v2
type:
- string
- 'null'
towerConfig:
type: string
userSecrets:
items:
type: string
type: array
workDir:
type: string
workspaceSecrets:
items:
type: string
type: array
type: object
SeqeraComputeCloudInstanceTypeSize:
enum:
- SMALL
- MEDIUM
- LARGE
type: string
CreatePipelineVersionRequest:
properties:
name:
type: string
type: object
PipelineListParams.SortDir:
enum:
- ASCENDING
- DESCENDING
type: string
SlurmComputeConfig:
allOf:
- $ref: '#/components/schemas/AbstractGridConfig'
title: Slurm configuration
type: object
AwsBatchConfig:
allOf:
- $ref: '#/components/schemas/ComputeConfig'
- properties:
cliPath:
type: string
computeJobRole:
type: string
computeQueue:
type: string
deletedResources:
items:
additionalProperties:
type: object
type: object
readOnly: true
type: array
dragenInstanceType:
type: string
dragenQueue:
type: string
executionRole:
type: string
forge:
$ref: '#/components/schemas/ForgeConfig'
forgedResources:
items:
additionalProperties:
type: object
type: object
type: array
fusion2Enabled:
type: boolean
fusionSnapshots:
type: boolean
headJobCpus:
format: int32
type: integer
headJobMemoryMb:
format: int32
type: integer
headJobRole:
type: string
headQueue:
type: string
logGroup:
# --- truncated at 32 KB (54 KB total) ---
# Full source: https://raw.githubusercontent.com/api-evangelist/seqera-labs/refs/heads/main/openapi/seqera-labs-pipelines-api-openapi.yml