Operations 1
Documentation
Documentation
https://reactome.org/dev/content-service
Documentation
https://reactome.org/dev/analysis
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OpenAPI Specification
openapi: 3.2.0
info:
title: Pathway Analysis Service database Report API
description: Provides an API for pathway over-representation and expression analysis as well as species comparison tool.
termsOfService: /license
contact:
name: Reactome
url: https://reactome.org
email: help@reactome.org
license:
name: Creative Commons Attribution 3.0 Unsupported License
url: https://creativecommons.org/licenses/by/3.0/legalcode
version: '2.0'
servers:
- url: /AnalysisService
tags:
- name: report
description: Retrieves report files in PDF format
paths:
/report/{token}/{species}/{filename}.pdf:
get:
tags:
- report
summary: Downloads a report for a given pathway analysis result
description: This method provides a report for a given pathway analysis result in a PDF document. This document contains data about the analysis itself followed by the pathways overview and the most significant pathways overlaid with the analysis result. Users can download and store this information in a convenient format to be checked in the future when the 'token' is not longer available.
operationId: generatePdfReport
parameters:
- name: token
in: path
description: The token associated with the data to query
required: true
schema:
type: string
- name: species
in: path
description: The species for which results will be reported
required: true
schema:
type: string
example: Homo sapiens
- name: filename
in: path
description: The name of the file to be downloaded
required: true
schema:
type: string
example: report
- name: number
in: query
description: Number of pathways reported (max 50)
required: false
schema:
type: integer
format: int32
default: 25
example: 25
- name: resource
in: query
required: false
schema:
type: string
description: the resource to sort
example: TOTAL
enum:
- TOTAL
- UNIPROT
- ENSEMBL
- CHEBI
- IUPHAR
- MIRBASE
- NCBI_PROTEIN
- EMBL
- COMPOUND
- PUBCHEM_COMPOUND
- name: importableOnly
in: query
description: Filters resources to only includes importable ones
required: false
schema:
type: boolean
default: false
- name: diagramProfile
in: query
required: false
schema:
type: string
description: Diagram Color Profile
example: Modern
enum:
- Modern
- Standard
- name: analysisProfile
in: query
required: false
schema:
type: string
description: Analysis Color Profile
example: Standard
enum:
- Standard
- Strosobar
- Copper Plus
- name: fireworksProfile
in: query
required: false
schema:
type: string
description: Diagram Color Profile
example: Barium Lithium
enum:
- Cooper
- Cooper Plus
- Barium Lithium
- Calcium Salts
responses:
'404':
description: No result corresponding to the token was found
'410':
description: Result deleted due to a new data release