Reactome

Reactome discover API

Reactome Data: Search engines discovery schema

Documentation GitHub OpenAPI

Operations 1

GET /data/discover/{identifier} The schema.org for an Event in Reactome knowledgebase #

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OpenAPI Specification

openapi: 3.2.0
info:
  title: Pathway Analysis Service database Discover API
  description: Provides an API for pathway over-representation and expression analysis as well as species comparison tool.
  termsOfService: /license
  contact:
    name: Reactome
    url: https://reactome.org
    email: help@reactome.org
  license:
    name: Creative Commons Attribution 3.0 Unsupported License
    url: https://creativecommons.org/licenses/by/3.0/legalcode
  version: '2.0'
servers:
- url: /AnalysisService
tags:
- name: discover
  description: 'Reactome Data: Search engines discovery schema'
paths:
  /data/discover/{identifier}:
    get:
      tags:
      - discover
      summary: The schema.org for an Event in Reactome knowledgebase
      description: For each event (reaction or pathway) this method generates a json file representing the dataset object as defined by schema.org (http). This is mainly used by search engines in order to index the data
      operationId: eventDiscovery
      parameters:
      - name: identifier
        in: path
        description: An event identifier
        required: true
        schema:
          type: string
        example: R-HSA-446203
      - name: view
        in: query
        description: Global parameter - Customise the view to be more concise and/or aggregate relationships
        required: false
        schema:
          type: string
          default: flatten
          enum:
          - flatten
          - nested
          - nested-aggregated
          example: null
      - name: includeRef
        in: query
        description: Global parameter - If true, replace element ref to dbId by standard JSOG object {@ref}
        required: false
        schema:
          type: boolean
          default: false
          example: null
      responses:
        '404':
          description: Identifier does not match with any event
          content:
            application/json:
              schema:
                $ref: '#/components/schemas/SchemaDataSet'
        '406':
          description: Not acceptable according to the accept headers sent in the request
          content:
            application/json:
              schema:
                $ref: '#/components/schemas/SchemaDataSet'
        '500':
          description: Internal Server Error
          content:
            application/json:
              schema:
                $ref: '#/components/schemas/SchemaDataSet'
components:
  schemas:
    SchemaDataCatalog:
      type: object
      properties:
        '@type':
          type: string
        name:
          type: string
        url:
          type: string
    SchemaDataSet:
      type: object
      properties:
        '@context':
          type: string
        '@type':
          type: string
        citation:
          type: array
          items:
            type: string
        creator:
          type: array
          items:
            $ref: '#/components/schemas/SchemaCreator'
        description:
          type: string
        distribution:
          type: array
          items:
            $ref: '#/components/schemas/SchemaDataDownload'
        includedInDataCatalog:
          $ref: '#/components/schemas/SchemaDataCatalog'
        keywords:
          type: array
          items:
            type: string
        license:
          type: string
        name:
          type: string
        sameAs:
          type: array
          items:
            type: string
        url:
          type: string
        version:
          type: string
    SchemaDataDownload:
      type: object
      properties:
        '@type':
          type: string
        contentUrl:
          type: string
        encodingFormat:
          type: string
        fileFormat:
          type: string
    SchemaCreator:
      type: object