EvolutionaryScale

EvolutionaryScale Embeddings API

Sequence-only tokenization and representation extraction.

GitHub OpenAPI

Operations 1

POST /api/v1/esmc/encode Encode Protein Sequence With ESM C #

Documentation

📖
Documentation
https://forge.evolutionaryscale.ai

Specifications

⚙
OpenAPI
https://artifacts.apis.io/evolutionaryscale/openapi/evolutionaryscale-embeddings-api-openapi.yml

Schemas & Data

📊
JSONSchema
https://artifacts.apis.io/evolutionaryscale/json-schema/evolutionaryscale-esm-protein-schema.json
📊
JSONSchema
https://artifacts.apis.io/evolutionaryscale/json-schema/evolutionaryscale-generation-config-schema.json
📊
JSONSchema
https://artifacts.apis.io/evolutionaryscale/json-schema/evolutionaryscale-logits-output-schema.json

Other Resources

🔗
SourceCode
https://github.com/Biohub/esm
🔗
JSONLD
https://artifacts.apis.io/evolutionaryscale/json-ld/evolutionaryscale-context.jsonld

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OpenAPI Specification

evolutionaryscale-embeddings-api-openapi.yml Raw ↑ 
openapi: 3.2.0
info:
  title: EvolutionaryScale Forge ESM Cambrian Embeddings API
  description: Hosted inference API for the ESM Cambrian (ESM C) protein representation learning family. ESM C is a drop-in replacement for ESM2 with comparable or better accuracy at substantially reduced memory footprint. Provides encode and logits operations for sequence embedding workflows. Available in 300M, 600M, and 6B parameter checkpoints.
  version: 2024-12-01
  contact:
    name: EvolutionaryScale Forge
    url: https://forge.evolutionaryscale.ai
  license:
    name: Cambrian Inference Clickthrough License Agreement
    url: https://www.evolutionaryscale.ai/policies/cambrian-inference-clickthrough-license-agreement
servers:
- url: https://forge.evolutionaryscale.ai
  description: EvolutionaryScale Forge Production
security:
- BearerAuth: []
tags:
- name: Embeddings
  description: Sequence-only tokenization and representation extraction.
paths:
  /api/v1/esmc/encode:
    post:
      summary: Encode Protein Sequence With ESM C
      description: Tokenize an `ESMProtein` (sequence track only) into an `ESMProteinTensor` ready for logits / embedding retrieval. ESM C operates over the sequence track exclusively.
      operationId: esmcEncode
      tags:
      - Embeddings
      requestBody:
        required: true
        content:
          application/json:
            schema:
              $ref: '#/components/schemas/ESMCEncodeRequest'
            examples:
              SimpleEncode:
                $ref: '#/components/examples/SimpleEncodeExample'
      responses:
        '200':
          description: Sequence tensor for the supplied protein.
          content:
            application/json:
              schema:
                $ref: '#/components/schemas/ESMProteinTensor'
        4XX:
          $ref: '#/components/responses/ErrorResponse'
components:
  examples:
    SimpleEncodeExample:
      summary: Encode a short protein sequence
      value:
        model: esmc-300m-2024-12
        protein:
          sequence: AAAAA
  responses:
    ErrorResponse:
      description: Error returned by the Forge API.
      content:
        application/json:
          schema:
            $ref: '#/components/schemas/Error'
  schemas:
    ESMCEncodeRequest:
      type: object
      required:
      - model
      - protein
      properties:
        model:
          type: string
          example: esmc-300m-2024-12
          enum:
          - esmc-300m-2024-12
          - esmc-600m-2024-12
          - esmc-6b-2024-12
        protein:
          $ref: '#/components/schemas/ESMProtein'
    ESMProtein:
      type: object
      properties:
        sequence:
          type: string
          description: Amino acid sequence using one-letter codes.
          example: MKTAYIAKQRQISFVKAHFSRQLEERLGLIEVQ
    Error:
      type: object
      properties:
        error:
          type: object
          properties:
            type:
              type: string
            message:
              type: string
            code:
              type: string
    ESMProteinTensor:
      type: object
      properties:
        sequence:
          type: array
          items:
            type: integer
  securitySchemes:
    BearerAuth:
      type: http
      scheme: bearer
      description: Forge API token issued via forge.evolutionaryscale.ai.