UCSC Genomic Data · Schema

UCSC DNA Sequence Result

Schema for a DNA sequence response from the UCSC Genome Browser API.

GenomicsBioinformaticsDNABiologyResearchOpen Science

Properties

Name Type Description
genome string Genome assembly identifier (e.g., hg38, mm39).
chrom string Chromosome identifier (e.g., chr1, chrM).
start integer Start position (0-based, half-open coordinates).
end integer End position (1-based, half-open coordinates).
dna string DNA sequence string (IUPAC nucleotide characters).
View JSON Schema on GitHub

JSON Schema

ucsc-genomic-data-sequence-schema.json Raw ↑
{
  "$schema": "http://json-schema.org/draft-07/schema#",
  "$id": "https://github.com/api-evangelist/ucsc-genomic-data/blob/main/json-schema/ucsc-genomic-data-sequence-schema.json",
  "title": "UCSC DNA Sequence Result",
  "description": "Schema for a DNA sequence response from the UCSC Genome Browser API.",
  "type": "object",
  "required": ["genome", "chrom", "dna"],
  "properties": {
    "genome": {
      "type": "string",
      "description": "Genome assembly identifier (e.g., hg38, mm39)."
    },
    "chrom": {
      "type": "string",
      "description": "Chromosome identifier (e.g., chr1, chrM)."
    },
    "start": {
      "type": "integer",
      "minimum": 0,
      "description": "Start position (0-based, half-open coordinates)."
    },
    "end": {
      "type": "integer",
      "minimum": 1,
      "description": "End position (1-based, half-open coordinates)."
    },
    "dna": {
      "type": "string",
      "pattern": "^[acgtACGTnN]*$",
      "description": "DNA sequence string (IUPAC nucleotide characters)."
    }
  }
}

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