UCSC Genomic Data · Schema
UCSC DNA Sequence Result
Schema for a DNA sequence response from the UCSC Genome Browser API.
GenomicsBioinformaticsDNABiologyResearchOpen Science
Properties
| Name | Type | Description |
|---|---|---|
| genome | string | Genome assembly identifier (e.g., hg38, mm39). |
| chrom | string | Chromosome identifier (e.g., chr1, chrM). |
| start | integer | Start position (0-based, half-open coordinates). |
| end | integer | End position (1-based, half-open coordinates). |
| dna | string | DNA sequence string (IUPAC nucleotide characters). |
JSON Schema
{
"$schema": "http://json-schema.org/draft-07/schema#",
"$id": "https://github.com/api-evangelist/ucsc-genomic-data/blob/main/json-schema/ucsc-genomic-data-sequence-schema.json",
"title": "UCSC DNA Sequence Result",
"description": "Schema for a DNA sequence response from the UCSC Genome Browser API.",
"type": "object",
"required": ["genome", "chrom", "dna"],
"properties": {
"genome": {
"type": "string",
"description": "Genome assembly identifier (e.g., hg38, mm39)."
},
"chrom": {
"type": "string",
"description": "Chromosome identifier (e.g., chr1, chrM)."
},
"start": {
"type": "integer",
"minimum": 0,
"description": "Start position (0-based, half-open coordinates)."
},
"end": {
"type": "integer",
"minimum": 1,
"description": "End position (1-based, half-open coordinates)."
},
"dna": {
"type": "string",
"pattern": "^[acgtACGTnN]*$",
"description": "DNA sequence string (IUPAC nucleotide characters)."
}
}
}
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