Broad Institute · Schema

Submission

BiotechnologyResearchGenomicsOpen ScienceNon-Profit

Properties

Name Type Description
submissionId string SubmissionRequest unique identifier
submissionDate string SubmissionRequest date
submitter string user that created the submission
methodConfigurationNamespace string Method configuration namespace
methodConfigurationName string Method configuration name
submissionEntity object
workflows array Status of Workflow(s)
status object
cost number The compute cost of this submission
useCallCache boolean Whether or not to read from cache for this submission
deleteIntermediateOutputFiles boolean Whether or not to delete intermediate output files when the workflow completes. See Cromwell docs for more information.
useReferenceDisks boolean Whether or not to use pre-built disks for common genome references
memoryRetryMultiplier number If a task fails due to running out of memory and the task has `maxRetries` in its runtime attributes, then it will be retried with its memory multiplied by this amount. See [Cromwell docs](https://cro
workflowFailureMode string What happens after a task fails. Choose from ContinueWhilePossible and NoNewCalls. Defaults to NoNewCalls if not specified. See Cromwell docs for more information.
userComment string Comment for the submission
View JSON Schema on GitHub

JSON Schema

broad-institute-submission-schema.json Raw ↑
{
  "$schema": "https://json-schema.org/draft/2020-12/schema",
  "$id": "https://raw.githubusercontent.com/api-evangelist/broad-institute/main/json-schema/broad-institute-submission-schema.json",
  "title": "Submission",
  "x-generated": "2026-10-15",
  "x-method": "derived",
  "x-generator": "derive-json-schema.py",
  "x-source": "openapi/broad-institute-openapi.yml#/components/schemas/Submission",
  "type": "object",
  "properties": {
    "submissionId": {
      "type": "string",
      "description": "SubmissionRequest unique identifier"
    },
    "submissionDate": {
      "type": "string",
      "description": "SubmissionRequest date",
      "format": "date-time"
    },
    "submitter": {
      "type": "string",
      "description": "user that created the submission"
    },
    "methodConfigurationNamespace": {
      "type": "string",
      "description": "Method configuration namespace"
    },
    "methodConfigurationName": {
      "type": "string",
      "description": "Method configuration name"
    },
    "submissionEntity": {
      "$ref": "#/$defs/AttributeEntityReference"
    },
    "workflows": {
      "type": "array",
      "description": "Status of Workflow(s)",
      "items": {
        "$ref": "#/$defs/Workflow"
      }
    },
    "status": {
      "$ref": "#/$defs/SubmissionStatus"
    },
    "cost": {
      "type": "number",
      "description": "The compute cost of this submission",
      "format": "float"
    },
    "useCallCache": {
      "type": "boolean",
      "description": "Whether or not to read from cache for this submission"
    },
    "deleteIntermediateOutputFiles": {
      "type": "boolean",
      "description": "Whether or not to delete intermediate output files when the workflow completes. See Cromwell docs for more information."
    },
    "useReferenceDisks": {
      "type": "boolean",
      "description": "Whether or not to use pre-built disks for common genome references"
    },
    "memoryRetryMultiplier": {
      "type": "number",
      "description": "If a task fails due to running out of memory and the task has `maxRetries` in its runtime attributes, then it will be retried with its memory multiplied by this amount.  See [Cromwell docs](https://cromwell.readthedocs.io/en/develop/cromwell_features/RetryWithMoreMemory/#retry-with-more-memory) for more information."
    },
    "workflowFailureMode": {
      "type": "string",
      "description": "What happens after a task fails. Choose from ContinueWhilePossible and NoNewCalls. Defaults to NoNewCalls if not specified. See Cromwell docs for more information.",
      "default": "NoNewCalls",
      "enum": [
        "NoNewCalls",
        "ContinueWhilePossible"
      ]
    },
    "userComment": {
      "type": "string",
      "description": "Comment for the submission"
    }
  },
  "$defs": {
    "AttributeEntityReference": {
      "required": [
        "entityName",
        "entityType"
      ],
      "type": "object",
      "properties": {
        "entityType": {
          "type": "string",
          "description": "The type of the entity"
        },
        "entityName": {
          "type": "string",
          "description": "The name of the entity"
        }
      },
      "description": ""
    },
    "SubmissionStatus": {
      "type": "string",
      "description": "submission status",
      "enum": [
        "Accepted",
        "Evaluating",
        "Submitting",
        "Submitted",
        "Aborting",
        "Aborted",
        "Done"
      ]
    },
    "SubmissionValidationValue": {
      "required": [
        "inputName"
      ],
      "type": "object",
      "properties": {
        "value": {
          "type": "string",
          "description": "the value of the input expression for the specified entity"
        },
        "error": {
          "type": "string",
          "description": "parsing error(s)"
        },
        "inputName": {
          "type": "string",
          "description": "name of input"
        }
      },
      "description": "result of an expression parse for one of the inputs"
    },
    "Workflow": {
      "type": "object",
      "properties": {
        "workflowId": {
          "type": "string",
          "description": "Workflow unique identifier"
        },
        "status": {
          "$ref": "#/$defs/WorkflowStatus"
        },
        "statusLastChangedDate": {
          "type": "string",
          "description": "Status last-changed date",
          "format": "date-time"
        },
        "workflowEntity": {
          "$ref": "#/$defs/AttributeEntityReference"
        },
        "inputResolutions": {
          "type": "array",
          "description": "The evaluation of each input",
          "items": {
            "$ref": "#/$defs/SubmissionValidationValue"
          }
        },
        "messages": {
          "type": "array",
          "description": "List of messages about this workflow",
          "items": {
            "type": "string"
          }
        },
        "cost": {
          "type": "number",
          "description": "The run cost of this workflow, if available",
          "format": "float"
        },
        "costType": {
          "type": "string",
          "description": "The method used to calculate the run cost",
          "enum": [
            "Actual",
            "Estimated"
          ]
        }
      },
      "description": ""
    },
    "WorkflowStatus": {
      "type": "string",
      "description": "workflow status",
      "enum": [
        "Queued",
        "Launching",
        "Submitted",
        "Running",
        "Failed",
        "Succeeded",
        "Aborting",
        "Aborted",
        "Unknown"
      ]
    }
  }
}

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