Broad Institute · Schema

SubmissionRequest

If the referenced method configuration takes no root entity, do not define `entityType`, `entityName` and `expression`.

BiotechnologyResearchGenomicsOpen ScienceNon-Profit

Properties

Name Type Description
methodConfigurationNamespace string Namespace of the method configuration to execute.
methodConfigurationName string Name of the method configuration to execute.
entityType string Type of root entity for expression. Optional if the method configuration has no root entity.
entityName string Name of root entity for expression. Optional if the method configuration has no root entity.
expression string Expression that resolves to one or more entities matching the entity type in the method configuration. Optional if the method configuration has no root entity.
useCallCache boolean Whether or not to read from cache for this submission.
deleteIntermediateOutputFiles boolean Whether or not to delete intermediate output files when the workflow completes. See Cromwell docs for more information.
useReferenceDisks boolean Whether or not to use pre-built disks for common genome references
memoryRetryMultiplier number If a task fails due to running out of memory and the task has `maxRetries` in its runtime attributes, then it will be retried with its memory multiplied by this amount. See [Cromwell docs](https://cro
workflowFailureMode string What happens after a task fails. Choose from ContinueWhilePossible and NoNewCalls. Defaults to NoNewCalls if not specified. See Cromwell docs for more information.
userComment string Freeform user defined description, optional (max length 1000 characters)
ignoreEmptyOutputs boolean Whether or not to create output columns if they would be empty and optional. Defaults to false (columns are created).
perWorkflowCostCap number A cost threshold in USD to apply to individual workflows. When the estimated cost is exceeded, the workflow is terminated.
View JSON Schema on GitHub

JSON Schema

broad-institute-submission-request-schema.json Raw ↑
{
  "$schema": "https://json-schema.org/draft/2020-12/schema",
  "$id": "https://raw.githubusercontent.com/api-evangelist/broad-institute/main/json-schema/broad-institute-submission-request-schema.json",
  "title": "SubmissionRequest",
  "description": "If the referenced method configuration takes no root entity, do not define `entityType`, `entityName` and `expression`.",
  "x-generated": "2026-10-15",
  "x-method": "derived",
  "x-generator": "derive-json-schema.py",
  "x-source": "openapi/broad-institute-openapi.yml#/components/schemas/SubmissionRequest",
  "required": [
    "methodConfigurationName",
    "methodConfigurationNamespace",
    "useCallCache"
  ],
  "type": "object",
  "properties": {
    "methodConfigurationNamespace": {
      "type": "string",
      "description": "Namespace of the method configuration to execute."
    },
    "methodConfigurationName": {
      "type": "string",
      "description": "Name of the method configuration to execute."
    },
    "entityType": {
      "type": "string",
      "description": "Type of root entity for expression. Optional if the method configuration has no root entity."
    },
    "entityName": {
      "type": "string",
      "description": "Name of root entity for expression. Optional if the method configuration has no root entity."
    },
    "expression": {
      "type": "string",
      "description": "Expression that resolves to one or more entities matching the entity type in the method configuration. Optional if the method configuration has no root entity."
    },
    "useCallCache": {
      "type": "boolean",
      "description": "Whether or not to read from cache for this submission."
    },
    "deleteIntermediateOutputFiles": {
      "type": "boolean",
      "description": "Whether or not to delete intermediate output files when the workflow completes. See Cromwell docs for more information."
    },
    "useReferenceDisks": {
      "type": "boolean",
      "description": "Whether or not to use pre-built disks for common genome references"
    },
    "memoryRetryMultiplier": {
      "type": "number",
      "description": "If a task fails due to running out of memory and the task has `maxRetries` in its runtime attributes, then it will be retried with its memory multiplied by this amount.  See [Cromwell docs](https://cromwell.readthedocs.io/en/develop/cromwell_features/RetryWithMoreMemory/#retry-with-more-memory) for more information."
    },
    "workflowFailureMode": {
      "type": "string",
      "description": "What happens after a task fails. Choose from ContinueWhilePossible and NoNewCalls. Defaults to NoNewCalls if not specified. See Cromwell docs for more information.",
      "default": "NoNewCalls",
      "enum": [
        "NoNewCalls",
        "ContinueWhilePossible"
      ]
    },
    "userComment": {
      "type": "string",
      "description": "Freeform user defined description, optional (max length 1000 characters)"
    },
    "ignoreEmptyOutputs": {
      "type": "boolean",
      "default": false,
      "description": "Whether or not to create output columns if they would be empty and optional.  Defaults to false (columns are created)."
    },
    "perWorkflowCostCap": {
      "type": "number",
      "description": "A cost threshold in USD to apply to individual workflows. When the estimated cost is exceeded, the workflow is terminated.",
      "format": "float",
      "minimum": 0.01,
      "maximum": 9999999999.99,
      "multipleOf": 0.01
    }
  }
}

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