Broad Institute · Schema
SubmissionRequest
If the referenced method configuration takes no root entity, do not define `entityType`, `entityName` and `expression`.
BiotechnologyResearchGenomicsOpen ScienceNon-Profit
Properties
| Name | Type | Description |
|---|---|---|
| methodConfigurationNamespace | string | Namespace of the method configuration to execute. |
| methodConfigurationName | string | Name of the method configuration to execute. |
| entityType | string | Type of root entity for expression. Optional if the method configuration has no root entity. |
| entityName | string | Name of root entity for expression. Optional if the method configuration has no root entity. |
| expression | string | Expression that resolves to one or more entities matching the entity type in the method configuration. Optional if the method configuration has no root entity. |
| useCallCache | boolean | Whether or not to read from cache for this submission. |
| deleteIntermediateOutputFiles | boolean | Whether or not to delete intermediate output files when the workflow completes. See Cromwell docs for more information. |
| useReferenceDisks | boolean | Whether or not to use pre-built disks for common genome references |
| memoryRetryMultiplier | number | If a task fails due to running out of memory and the task has `maxRetries` in its runtime attributes, then it will be retried with its memory multiplied by this amount. See [Cromwell docs](https://cro |
| workflowFailureMode | string | What happens after a task fails. Choose from ContinueWhilePossible and NoNewCalls. Defaults to NoNewCalls if not specified. See Cromwell docs for more information. |
| userComment | string | Freeform user defined description, optional (max length 1000 characters) |
| ignoreEmptyOutputs | boolean | Whether or not to create output columns if they would be empty and optional. Defaults to false (columns are created). |
| perWorkflowCostCap | number | A cost threshold in USD to apply to individual workflows. When the estimated cost is exceeded, the workflow is terminated. |
JSON Schema
{
"$schema": "https://json-schema.org/draft/2020-12/schema",
"$id": "https://raw.githubusercontent.com/api-evangelist/broad-institute/main/json-schema/broad-institute-submission-request-schema.json",
"title": "SubmissionRequest",
"description": "If the referenced method configuration takes no root entity, do not define `entityType`, `entityName` and `expression`.",
"x-generated": "2026-10-15",
"x-method": "derived",
"x-generator": "derive-json-schema.py",
"x-source": "openapi/broad-institute-openapi.yml#/components/schemas/SubmissionRequest",
"required": [
"methodConfigurationName",
"methodConfigurationNamespace",
"useCallCache"
],
"type": "object",
"properties": {
"methodConfigurationNamespace": {
"type": "string",
"description": "Namespace of the method configuration to execute."
},
"methodConfigurationName": {
"type": "string",
"description": "Name of the method configuration to execute."
},
"entityType": {
"type": "string",
"description": "Type of root entity for expression. Optional if the method configuration has no root entity."
},
"entityName": {
"type": "string",
"description": "Name of root entity for expression. Optional if the method configuration has no root entity."
},
"expression": {
"type": "string",
"description": "Expression that resolves to one or more entities matching the entity type in the method configuration. Optional if the method configuration has no root entity."
},
"useCallCache": {
"type": "boolean",
"description": "Whether or not to read from cache for this submission."
},
"deleteIntermediateOutputFiles": {
"type": "boolean",
"description": "Whether or not to delete intermediate output files when the workflow completes. See Cromwell docs for more information."
},
"useReferenceDisks": {
"type": "boolean",
"description": "Whether or not to use pre-built disks for common genome references"
},
"memoryRetryMultiplier": {
"type": "number",
"description": "If a task fails due to running out of memory and the task has `maxRetries` in its runtime attributes, then it will be retried with its memory multiplied by this amount. See [Cromwell docs](https://cromwell.readthedocs.io/en/develop/cromwell_features/RetryWithMoreMemory/#retry-with-more-memory) for more information."
},
"workflowFailureMode": {
"type": "string",
"description": "What happens after a task fails. Choose from ContinueWhilePossible and NoNewCalls. Defaults to NoNewCalls if not specified. See Cromwell docs for more information.",
"default": "NoNewCalls",
"enum": [
"NoNewCalls",
"ContinueWhilePossible"
]
},
"userComment": {
"type": "string",
"description": "Freeform user defined description, optional (max length 1000 characters)"
},
"ignoreEmptyOutputs": {
"type": "boolean",
"default": false,
"description": "Whether or not to create output columns if they would be empty and optional. Defaults to false (columns are created)."
},
"perWorkflowCostCap": {
"type": "number",
"description": "A cost threshold in USD to apply to individual workflows. When the estimated cost is exceeded, the workflow is terminated.",
"format": "float",
"minimum": 0.01,
"maximum": 9999999999.99,
"multipleOf": 0.01
}
}
}
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