Helena Bioinformatics · JSON-LD Context

Helena Bio Context

JSON-LD context defining the semantic vocabulary for Helena Bio from Helena Bioinformatics.

120 Classes 510 Properties 4 Namespaces
View Context View on GitHub

Namespaces

schema: https://schema.org/
xsd: http://www.w3.org/2001/XMLSchema#
dcterms: http://purl.org/dc/terms/
helena: https://helena.bio/schema#

Classes

AdRiskResponseSchema AdRiskResultSchema AllDatabasesStatusResponse AnnotationRecord Association BackupLevel BackupListResponse BackupStatus BackupStatusResponse BackupSummary BrowserExonPextOut BrowserGeneOut BrowserLeadOut BrowserOverviewResponse BrowserReferenceCodonOut BrowserReferenceResponse BrowserReferenceTranscriptOut BrowserRegionOut BrowserRegionResponse BrowserSnvOut BrowserSvOut Candidate CarrierResponseSchema CarrierResultSchema CatalogEntry CatalogRequest CatalogResponse CheckResultResponse ClassifierVersionResponse ClinVarExportSuggestions ClinVarLiteExportRequest ClinVarLiteExportResponse ClinicalAxis ClinicalConsequenceRecord ClinicalConsequencesData ClinicalVariantExample ClinicalVariantsData CodingSegment ConstraintData ConstraintMetric ConversionMetadataSchema CreateFamilyFromJointVcfRequest CreateFamilyFromSeparateVcfsRequest CreateNoteRequest CreateOverrideRequest CurationResponse CurationStateResponse CytobandBand CytobandResponse DatabaseDetailResponse DatabaseStatusSchema DeleteBackupResponse DiscordanceRequest DiscordanceResponse DiscordanceVariantResponse DiscoveryRecord DiseaseAssertion DiseaseContextRequest DiseaseContextRow DiseaseData DiseaseRequest DistributionBin DosageAssertion DosageData EffectiveClassificationResponse Exon ExpressionData ExpressionRecord FamilyFromJointVcfResponse FamilyPublicResponse FlagVariantRequest FlagVariantResponse Freshness FreshnessSchema GeneAggregated GeneAggregatedResponse GeneDiseaseResponse GeneIdentity GeneLiteratureRequest GeneLiteratureResponse GeneRequest GwasData GwasRecord HTTPValidationError InternalUpdateStoragePathsRequest JointVcfSampleMapping MechanismAssertion MechanismsData MtdnaCurationFields NoteAuthor NoteResponse NotesListResponse OverrideEntry OverrideResultResponse OverridesListResponse OverviewData PangenomeBubble PangenomeBubbleEvidence PangenomeEdge PangenomeGraphResponse PangenomeMeta PangenomeNode PangenomePath PangenomePrivateVariant ParquetStatusSchema PhenotypeRecord PhenotypesData ProfileRequest ProfileResponse ProteinCrossReference ProteinPathwaysData ProteinRecord PublicAtlasClassCounts PublicAtlasStatisticsReadyResponse PublicAtlasStatisticsUnavailableResponse PublicClinVarEvidence PublicConservationEvidence PublicDosageEvidence PublicExpertEvidence PublicExternalLinks

Properties

Property Type Container
session_id string
total_ad_risk integer
findings list
variant_idx integer
gene_symbol string
risk_type string
inheritance_mode string
disease_name
clinical_note string
recurrence_risk string
confidence string
acmg_class string
chromosome string
position integer
genotype string
hgvs_protein
transcript_id
transcript_representations
hgvs_cdna
rsid
global_af
review_stars
reference_db reference
databases list
is_user_flagged boolean
user_flag_comment
flagged_by
acmg_override_class
acmg_class_original
override_reason
overridden_by
geneSymbol string
hgncId
diseaseName string
diseaseId string
modeOfInheritance string
modeOfInheritanceId
classification string
expertPanel
reportUrl
classificationDate
sopVersion
backups list
total integer
backup_id string
status reference
progress integer
current_step string
error
level string
created_at
completed_at
duration_seconds
total_size_bytes integer
chrom string
gene string
exonStart integer
exonEnd integer
maxTissuePext decimal
meanPext decimal
brainCortexPext
wholeBloodPext
tier string
symbol string
start integer
end integer
strand
exons list
pos integer
snvs list
svs list
lead
bases string
aminoAcid string
proteinPosition integer
genomicPositions list
sequence string
transcript
transcriptId string
proteinId
cds list
codons list
axis string
iscaId
score
genes list
regions list
pext list
cls
hgvs
ref
alt
bayesdelNoaf
bayesdelNoafPred
spliceaiMax
spliceaiPred
phylop
gerp
alphamissense
sift
metasvm
dann
mpc
af
afGrpmax
popmax
hom
loeuf
misZ
pli
clinvarSig
reviewStars
clinvarId
criteria
consequence
impact
hgvsCdna
transcriptRepresentations
exonNumber
domains
pm1Source
vcepApplied
vcepPanel
deNovo
hiScore
tsScore
svType
identity reference
match_types list
matched_terms list
total_carriers integer
ar_carrier_count integer
xl_carrier_count integer
carriers list
carrier_type string
gene_id string
canonical_symbol string
request_id string
snapshot_id
limit integer
cursor
schema_version string
count_unit string
entries list
returned integer
next_cursor
critical integer
high integer
medium integer
low integer
variants list
version string
label string
contract_version integer
hgvs_candidates list
suggested_hgvs
requires_hgvs_validation boolean
hgvs_name string
rationale string
evidence_codes list
mode_of_inheritance string
expert_review_confirmed boolean
hgvs_validated boolean
expected_classification string
condition_id_type
condition_id_value
preferred_condition_name
collection_method string
allele_origin string
affected_status string
number_of_individuals integer
citations list
local_id
public_url
variation_identifiers list
alternate_designations list
clinvar_accession
record_status
package_name string
package_base64 string
upload_files list
manifest
represented_variations integer
classification_counts list
review_status_counts list
source_id string
so_id string
term string
axes list
kind string
eligible_variations integer
membership_rule string
consequence_scope string
records list
variation_id string
name string
variant_type string
germline
germline_review_status
somatic_clinical_impact
somatic_review_status
oncogenicity
oncogenicity_review_status
source_url string
resolver_allele
resolver_status string
unique_variation_total integer
variant_type_counts list
example_selection string
rank integer
phase integer
source_gene_id
source_gene_namespace
source_canonical
source_mane_select
selection_rule string
oe_lof
oe_lof_lower
oe_lof_upper
observed_lof
oe_missense
oe_missense_lower
oe_missense_upper
observed_missense
expected_lof
missense_z
quality_flags list
expected_synonymous
expected_missense
display_status string
gene_flags list
constraint_flags list
reported_metrics
start_time
elapsed_seconds
elapsed_human
successful_chromosomes
failed_chromosomes
vcf_file_path string
family_name
family_notes
inheritance_hypothesis
sample_role_mapping list
staging_session_id
filtering_preset string
members list
text string
new_class string
pipeline_class string
reason string
curation_fields reference
curation_state reference
effective_classification reference
curated_by
audit_event_id
validation_warnings list
has_curated_flags
strength_enums
pp1_disqualified boolean
curated_contributed boolean
emitted_curated_criteria list
start_pos integer
end_pos integer
band_name
gie_stain
arm
coord_system string
bands list
display_name string
description
priority integer
enabled boolean
license_required boolean
vep_required boolean
source reference
parquet reference
freshness reference
validation reference
detail
deleted boolean
checks
max_results_per_check integer
classifier_version_current string
classifier_version_data string
total_variants_analyzed integer
total_discordances integer
summary
format_warnings list
acmg_criteria
severity string
extra
work_id string
pmid
title string
journal
publication_date
doi
rank_score decimal
relation string
assertion_id string
disease_id string
inheritance
curation_date
panel
criteria_version
report_url string
mechanism
allelic_requirement
mirrored_assertion_id
original_disease_id
submitter
mechanism_support
variant_consequence
pmids list
rows list
phenotype_terms list
offset integer
disease string
count integer
evaluated_at
pipeline_acmg_class string
pipeline_criteria string
evaluator_acmg_class
evaluator_criteria string
cat_m_messages list
ensembl_gene_id string
tissue_id string
tissue_label string
median_tpm
unit string
statistic string
sample_count
category_type string
family reference
session_ids list
id string
created_by string
organization_id string
notes
updated_at
comment string
email_sent boolean
message string
last_source_check
stale boolean
stale_reason
source_age_days
parquet_age_days
cache_ttl_days
is_within_ttl
suggested_action
variant_count integer
best_acmg_class
best_acmg_priority integer
best_impact
best_priority_score
pathogenic_count integer
likely_pathogenic_count integer
vus_count integer
likely_benign_count integer
benign_count integer
mtdna_variant_count integer
total_genes integer
total_variants integer
page integer
page_size integer
total_pages integer
has_next_page boolean
has_previous_page boolean
contractVersion string
query reference
associations list
pagination reference
warnings list
usage_boundary reference
locus_type string
aliases list
previous_symbols list
ensembl_ids list
ncbi_gene_ids list
replacement_gene_ids list
sort string
owner string
captured_at string
capture_sha256 string
owner_contract_version string
owner_returned_count integer
filtered_unsafe_link_count integer
has_more boolean
semantic_index_used boolean
semantic_degraded_reason
graph_used boolean
graph_version
graph_degraded_reason
limits list
association_id string
association_identity_kind string
study_accession string
trait string
trait_ids list
mapped_trait string
reported_genes string
mapped_genes string
variant string
p_value string
p_value_context
odds_ratio_or_beta
confidence_interval
gene_assignment string
gene_assignments list
mapped_gene_context list
log_storage_path string
results_storage_path string
sample_name string
family_role string
sex
clinical_profile
support
mt_ps2_strength
mt_ps3_evidence
mt_ps4_proband_count
mt_ps4_haplogroup_diversity_count
mt_pm6_strength
mt_pp1_maternal_member_count
mt_pp1_homoplasmic_in_all
mt_pp1_heteroplasmy_correlation
mt_pp4_etc_deficiency
mt_bs2_strength
mt_bs3_evidence
mt_bs4_evidence
mt_bp5_evidence
initials string
user reference
total_count integer
overrides list
summary_source_id
alleles list
evidence
snv
from string
to string
nodes list
edges list
paths list
bubbles list
privateVariants list
meta reference
locus string
coordinateSystem string
inferredPhasing boolean
x decimal
y decimal
length integer
bubbleId
route list
bold boolean
acmgClass
exists boolean
path string
partitions integer
partitions_expected integer
total_size_human string
last_modified
row_count
conversion_metadata
phenotype_id string
phenotype_label
generated_at string
sources
sections
database string
accession string
entry_name string
reviewed boolean
protein_name string
protein_length integer
function_text
function_evidence list
pathway_text
cross_references list
pathogenic integer
likely_pathogenic integer
uncertain_significance integer
likely_benign integer
benign integer
classes reference
observed_at dateTime
retryable boolean
clinical_significance
review_status
disease_names list
protein_representation
canonical_url
availability string
phylop100way_vertebrate
gerp_rs
haploinsufficiency_score
triplosensitivity_score
vcep_applied boolean
vcep_panel
erepo_assertion
erepo_panel
erepo_disease
erepo_summary
erepo_url
clinvar
gnomad
ensembl_gene
ensembl_transcript
clingen_erepo

JSON-LD Document

Raw ↑
{
  "@context": {
    "@vocab": "https://helena.bio/schema#",
    "schema": "https://schema.org/",
    "xsd": "http://www.w3.org/2001/XMLSchema#",
    "dcterms": "http://purl.org/dc/terms/",
    "helena": "https://helena.bio/schema#",
    "AdRiskResponseSchema": "helena:AdRiskResponseSchema",
    "session_id": {
      "@id": "helena:session_id",
      "@type": "xsd:string"
    },
    "total_ad_risk": {
      "@id": "helena:total_ad_risk",
      "@type": "xsd:integer"
    },
    "findings": {
      "@id": "helena:findings",
      "@container": "@list"
    },
    "AdRiskResultSchema": "helena:AdRiskResultSchema",
    "variant_idx": {
      "@id": "helena:variant_idx",
      "@type": "xsd:integer"
    },
    "gene_symbol": {
      "@id": "helena:gene_symbol",
      "@type": "xsd:string"
    },
    "risk_type": {
      "@id": "helena:risk_type",
      "@type": "xsd:string"
    },
    "inheritance_mode": {
      "@id": "helena:inheritance_mode",
      "@type": "xsd:string"
    },
    "disease_name": {
      "@id": "helena:disease_name"
    },
    "clinical_note": {
      "@id": "helena:clinical_note",
      "@type": "xsd:string"
    },
    "recurrence_risk": {
      "@id": "helena:recurrence_risk",
      "@type": "xsd:string"
    },
    "confidence": {
      "@id": "helena:confidence",
      "@type": "xsd:string"
    },
    "acmg_class": {
      "@id": "helena:acmg_class",
      "@type": "xsd:string"
    },
    "chromosome": {
      "@id": "helena:chromosome",
      "@type": "xsd:string"
    },
    "position": {
      "@id": "helena:position",
      "@type": "xsd:integer"
    },
    "genotype": {
      "@id": "helena:genotype",
      "@type": "xsd:string"
    },
    "hgvs_protein": {
      "@id": "helena:hgvs_protein"
    },
    "transcript_id": {
      "@id": "helena:transcript_id"
    },
    "transcript_representations": {
      "@id": "helena:transcript_representations"
    },
    "hgvs_cdna": {
      "@id": "helena:hgvs_cdna"
    },
    "rsid": {
      "@id": "helena:rsid"
    },
    "global_af": {
      "@id": "helena:global_af"
    },
    "review_stars": {
      "@id": "helena:review_stars"
    },
    "AllDatabasesStatusResponse": "helena:AllDatabasesStatusResponse",
    "reference_db": {
      "@id": "helena:reference_db",
      "@type": "@id"
    },
    "databases": {
      "@id": "helena:databases",
      "@container": "@list"
    },
    "AnnotationRecord": "helena:AnnotationRecord",
    "is_user_flagged": {
      "@id": "helena:is_user_flagged",
      "@type": "xsd:boolean"
    },
    "user_flag_comment": {
      "@id": "helena:user_flag_comment"
    },
    "flagged_by": {
      "@id": "helena:flagged_by"
    },
    "acmg_override_class": {
      "@id": "helena:acmg_override_class"
    },
    "acmg_class_original": {
      "@id": "helena:acmg_class_original"
    },
    "override_reason": {
      "@id": "helena:override_reason"
    },
    "overridden_by": {
      "@id": "helena:overridden_by"
    },
    "Association": "helena:Association",
    "geneSymbol": {
      "@id": "helena:geneSymbol",
      "@type": "xsd:string"
    },
    "hgncId": {
      "@id": "helena:hgncId"
    },
    "diseaseName": {
      "@id": "helena:diseaseName",
      "@type": "xsd:string"
    },
    "diseaseId": {
      "@id": "helena:diseaseId",
      "@type": "xsd:string"
    },
    "modeOfInheritance": {
      "@id": "helena:modeOfInheritance",
      "@type": "xsd:string"
    },
    "modeOfInheritanceId": {
      "@id": "helena:modeOfInheritanceId"
    },
    "classification": {
      "@id": "helena:classification",
      "@type": "xsd:string"
    },
    "expertPanel": {
      "@id": "helena:expertPanel"
    },
    "reportUrl": {
      "@id": "helena:reportUrl"
    },
    "classificationDate": {
      "@id": "helena:classificationDate"
    },
    "sopVersion": {
      "@id": "helena:sopVersion"
    },
    "BackupLevel": "helena:BackupLevel",
    "BackupListResponse": "helena:BackupListResponse",
    "backups": {
      "@id": "helena:backups",
      "@container": "@list"
    },
    "total": {
      "@id": "helena:total",
      "@type": "xsd:integer"
    },
    "BackupStatus": "helena:BackupStatus",
    "BackupStatusResponse": "helena:BackupStatusResponse",
    "backup_id": {
      "@id": "helena:backup_id",
      "@type": "xsd:string"
    },
    "status": {
      "@id": "helena:status",
      "@type": "@id"
    },
    "progress": {
      "@id": "helena:progress",
      "@type": "xsd:integer"
    },
    "current_step": {
      "@id": "helena:current_step",
      "@type": "xsd:string"
    },
    "error": {
      "@id": "helena:error"
    },
    "BackupSummary": "helena:BackupSummary",
    "level": {
      "@id": "helena:level",
      "@type": "xsd:string"
    },
    "created_at": {
      "@id": "helena:created_at"
    },
    "completed_at": {
      "@id": "helena:completed_at"
    },
    "duration_seconds": {
      "@id": "helena:duration_seconds"
    },
    "total_size_bytes": {
      "@id": "helena:total_size_bytes",
      "@type": "xsd:integer"
    },
    "BrowserExonPextOut": "helena:BrowserExonPextOut",
    "chrom": {
      "@id": "helena:chrom",
      "@type": "xsd:string"
    },
    "gene": {
      "@id": "helena:gene",
      "@type": "xsd:string"
    },
    "exonStart": {
      "@id": "helena:exonStart",
      "@type": "xsd:integer"
    },
    "exonEnd": {
      "@id": "helena:exonEnd",
      "@type": "xsd:integer"
    },
    "maxTissuePext": {
      "@id": "helena:maxTissuePext",
      "@type": "xsd:decimal"
    },
    "meanPext": {
      "@id": "helena:meanPext",
      "@type": "xsd:decimal"
    },
    "brainCortexPext": {
      "@id": "helena:brainCortexPext"
    },
    "wholeBloodPext": {
      "@id": "helena:wholeBloodPext"
    },
    "tier": {
      "@id": "helena:tier",
      "@type": "xsd:string"
    },
    "BrowserGeneOut": "helena:BrowserGeneOut",
    "symbol": {
      "@id": "helena:symbol",
      "@type": "xsd:string"
    },
    "start": {
      "@id": "helena:start",
      "@type": "xsd:integer"
    },
    "end": {
      "@id": "helena:end",
      "@type": "xsd:integer"
    },
    "strand": {
      "@id": "helena:strand"
    },
    "exons": {
      "@id": "helena:exons",
      "@container": "@list"
    },
    "BrowserLeadOut": "helena:BrowserLeadOut",
    "pos": {
      "@id": "helena:pos",
      "@type": "xsd:integer"
    },
    "BrowserOverviewResponse": "helena:BrowserOverviewResponse",
    "snvs": {
      "@id": "helena:snvs",
      "@container": "@list"
    },
    "svs": {
      "@id": "helena:svs",
      "@container": "@list"
    },
    "lead": {
      "@id": "helena:lead"
    },
    "BrowserReferenceCodonOut": "helena:BrowserReferenceCodonOut",
    "bases": {
      "@id": "helena:bases",
      "@type": "xsd:string"
    },
    "aminoAcid": {
      "@id": "helena:aminoAcid",
      "@type": "xsd:string"
    },
    "proteinPosition": {
      "@id": "helena:proteinPosition",
      "@type": "xsd:integer"
    },
    "genomicPositions": {
      "@id": "helena:genomicPositions",
      "@container": "@list"
    },
    "BrowserReferenceResponse": "helena:BrowserReferenceResponse",
    "sequence": {
      "@id": "helena:sequence",
      "@type": "xsd:string"
    },
    "transcript": {
      "@id": "helena:transcript"
    },
    "BrowserReferenceTranscriptOut": "helena:BrowserReferenceTranscriptOut",
    "transcriptId": {
      "@id": "helena:transcriptId",
      "@type": "xsd:string"
    },
    "proteinId": {
      "@id": "helena:proteinId"
    },
    "cds": {
      "@id": "helena:cds",
      "@container": "@list"
    },
    "codons": {
      "@id": "helena:codons",
      "@container": "@list"
    },
    "BrowserRegionOut": "helena:BrowserRegionOut",
    "axis": {
      "@id": "helena:axis",
      "@type": "xsd:string"
    },
    "iscaId": {
      "@id": "helena:iscaId"
    },
    "score": {
      "@id": "helena:score"
    },
    "BrowserRegionResponse": "helena:BrowserRegionResponse",
    "genes": {
      "@id": "helena:genes",
      "@container": "@list"
    },
    "regions": {
      "@id": "helena:regions",
      "@container": "@list"
    },
    "pext": {
      "@id": "helena:pext",
      "@container": "@list"
    },
    "BrowserSnvOut": "helena:BrowserSnvOut",
    "cls": {
      "@id": "helena:cls"
    },
    "hgvs": {
      "@id": "helena:hgvs"
    },
    "ref": {
      "@id": "helena:ref"
    },
    "alt": {
      "@id": "helena:alt"
    },
    "bayesdelNoaf": {
      "@id": "helena:bayesdelNoaf"
    },
    "bayesdelNoafPred": {
      "@id": "helena:bayesdelNoafPred"
    },
    "spliceaiMax": {
      "@id": "helena:spliceaiMax"
    },
    "spliceaiPred": {
      "@id": "helena:spliceaiPred"
    },
    "phylop": {
      "@id": "helena:phylop"
    },
    "gerp": {
      "@id": "helena:gerp"
    },
    "alphamissense": {
      "@id": "helena:alphamissense"
    },
    "sift": {
      "@id": "helena:sift"
    },
    "metasvm": {
      "@id": "helena:metasvm"
    },
    "dann": {
      "@id": "helena:dann"
    },
    "mpc": {
      "@id": "helena:mpc"
    },
    "af": {
      "@id": "helena:af"
    },
    "afGrpmax": {
      "@id": "helena:afGrpmax"
    },
    "popmax": {
      "@id": "helena:popmax"
    },
    "hom": {
      "@id": "helena:hom"
    },
    "loeuf": {
      "@id": "helena:loeuf"
    },
    "misZ": {
      "@id": "helena:misZ"
    },
    "pli": {
      "@id": "helena:pli"
    },
    "clinvarSig": {
      "@id": "helena:clinvarSig"
    },
    "reviewStars": {
      "@id": "helena:reviewStars"
    },
    "clinvarId": {
      "@id": "helena:clinvarId"
    },
    "criteria": {
      "@id": "helena:criteria"
    },
    "consequence": {
      "@id": "helena:consequence"
    },
    "impact": {
      "@id": "helena:impact"
    },
    "hgvsCdna": {
      "@id": "helena:hgvsCdna"
    },
    "transcriptRepresentations": {
      "@id": "helena:transcriptRepresentations"
    },
    "exonNumber": {
      "@id": "helena:exonNumber"
    },
    "domains": {
      "@id": "helena:domains"
    },
    "pm1Source": {
      "@id": "helena:pm1Source"
    },
    "vcepApplied": {
      "@id": "helena:vcepApplied"
    },
    "vcepPanel": {
      "@id": "helena:vcepPanel"
    },
    "deNovo": {
      "@id": "helena:deNovo"
    },
    "hiScore": {
      "@id": "helena:hiScore"
    },
    "tsScore": {
      "@id": "helena:tsScore"
    },
    "BrowserSvOut": "helena:BrowserSvOut",
    "svType": {
      "@id": "helena:svType"
    },
    "Candidate": "helena:Candidate",
    "identity": {
      "@id": "helena:identity",
      "@type": "@id"
    },
    "match_types": {
      "@id": "helena:match_types",
      "@container": "@list"
    },
    "matched_terms": {
      "@id": "helena:matched_terms",
      "@container": "@list"
    },
    "CarrierResponseSchema": "helena:CarrierResponseSchema",
    "total_carriers": {
      "@id": "helena:total_carriers",
      "@type": "xsd:integer"
    },
    "ar_carrier_count": {
      "@id": "helena:ar_carrier_count",
      "@type": "xsd:integer"
    },
    "xl_carrier_count": {
      "@id": "helena:xl_carrier_count",
      "@type": "xsd:integer"
    },
    "carriers": {
      "@id": "helena:carriers",
      "@container": "@list"
    },
    "CarrierResultSchema": "helena:CarrierResultSchema",
    "carrier_type": {
      "@id": "helena:carrier_type",
      "@type": "xsd:string"
    },
    "CatalogEntry": "helena:CatalogEntry",
    "gene_id": {
      "@id": "helena:gene_id",
      "@type": "xsd:string"
    },
    "canonical_symbol": {
      "@id": "helena:canonical_symbol",
      "@type": "xsd:string"
    },
    "CatalogRequest": "helena:CatalogRequest",
    "request_id": {
      "@id": "helena:request_id",
      "@type": "xsd:string"
    },
    "snapshot_id": {
      "@id": "helena:snapshot_id"
    },
    "limit": {
      "@id": "helena:limit",
      "@type": "xsd:integer"
    },
    "cursor": {
      "@id": "helena:cursor"
    },
    "CatalogResponse": "helena:CatalogResponse",
    "schema_version": {
      "@id": "helena:schema_version",
      "@type": "xsd:string"
    },
    "count_unit": {
      "@id": "helena:count_unit",
      "@type": "xsd:string"
    },
    "entries": {
      "@id": "helena:entries",
      "@container": "@list"
    },
    "returned": {
      "@id": "helena:returned",
      "@type": "xsd:integer"
    },
    "next_cursor": {
      "@id": "helena:next_cursor"
    },
    "CheckResultResponse": "helena:CheckResultResponse",
    "critical": {
      "@id": "helena:critical",
      "@type": "xsd:integer"
    },
    "high": {
      "@id": "helena:high",
      "@type": "xsd:integer"
    },
    "medium": {
      "@id": "helena:medium",
      "@type": "xsd:integer"
    },
    "low": {
      "@id": "helena:low",
      "@type": "xsd:integer"
    },
    "variants": {
      "@id": "helena:variants",
      "@container": "@list"
    },
    "ClassifierVersionResponse": "helena:ClassifierVersionResponse",
    "version": {
      "@id": "helena:version",
      "@type": "xsd:string"
    },
    "label": {
      "@id": "helena:label",
      "@type": "xsd:string"
    },
    "ClinVarExportSuggestions": "helena:ClinVarExportSuggestions",
    "contract_version": {
      "@id": "helena:contract_version",
      "@type": "xsd:integer"
    },
    "hgvs_candidates": {
      "@id": "helena:hgvs_candidates",
      "@container": "@list"
    },
    "suggested_hgvs": {
      "@id": "helena:suggested_hgvs"
    },
    "requires_hgvs_validation": {
      "@id": "helena:requires_hgvs_validation",
      "@type": "xsd:boolean"
    },
    "ClinVarLiteExportRequest": "helena:ClinVarLiteExportRequest",
    "hgvs_name": {
      "@id": "helena:hgvs_name",
      "@type": "xsd:string"
    },
    "rationale": {
      "@id": "helena:rationale",
      "@type": "xsd:string"
    },
    "evidence_codes": {
      "@id": "helena:evidence_codes",
      "@container": "@list"
    },
    "mode_of_inheritance": {
      "@id": "helena:mode_of_inheritance",
      "@type": "xsd:string"
    },
    "expert_review_confirmed": {
      "@id": "helena:expert_review_confirmed",
      "@type": "xsd:boolean"
    },
    "hgvs_validated": {
      "@id": "helena:hgvs_validated",
      "@type": "xsd:boolean"
    },
    "expected_classification": {
      "@id": "helena:expected_classification",
      "@type": "xsd:string"
    },
    "condition_id_type": {
      "@id": "helena:condition_id_type"
    },
    "condition_id_value": {
      "@id": "helena:condition_id_value"
    },
    "preferred_condition_name": {
      "@id": "helena:preferred_condition_name"
    },
    "collection_method": {
      "@id": "helena:collection_method",
      "@type": "xsd:string"
    },
    "allele_origin": {
      "@id": "helena:allele_origin",
      "@type": "xsd:string"
    },
    "affected_status": {
      "@id": "helena:affected_status",
      "@type": "xsd:string"
    },
    "number_of_individuals": {
      "@id": "helena:number_of_individuals",
      "@type": "xsd:integer"
    },
    "citations": {
      "@id": "helena:citations",
      "@container": "@list"
    },
    "local_id": {
      "@id": "helena:local_id"
    },
    "public_url": {
      "@id": "helena:public_url"
    },
    "variation_identifiers": {
      "@id": "helena:variation_identifiers",
      "@container": "@list"
    },
    "alternate_designations": {
      "@id": "helena:alternate_designations",
      "@container": "@list"
    },
    "clinvar_accession": {
      "@id": "helena:clinvar_accession"
    },
    "record_status": {
      "@id": "helena:record_status"
    },
    "ClinVarLiteExportResponse": "helena:ClinVarLiteExportResponse",
    "package_name": {
      "@id": "helena:package_name",
      "@type": "xsd:string"
    },
    "package_base64": {
      "@id": "helena:package_base64",
      "@type": "xsd:string"
    },
    "upload_files": {
      "@id": "helena:upload_files",
      "@container": "@list"
    },
    "manifest": {
      "@id": "helena:manifest"
    },
    "ClinicalAxis": "helena:ClinicalAxis",
    "represented_variations": {
      "@id": "helena:represented_variations",
      "@type": "xsd:integer"
    },
    "classification_counts": {
      "@id": "helena:classification_counts",
      "@container": "@list"
    },
    "review_status_counts": {
      "@id": "helena:review_status_counts",
      "@container": "@list"
    },
    "ClinicalConsequenceRecord": "helena:ClinicalConsequenceRecord",
    "source_id": {
      "@id": "helena:source_id",
      "@type": "xsd:string"
    },
    "so_id": {
      "@id": "helena:so_id",
      "@type": "xsd:string"
    },
    "term": {
      "@id": "helena:term",
      "@type": "xsd:string"
    },
    "axes": {
      "@id": "helena:axes",
      "@container": "@list"
    },
    "ClinicalConsequencesData": "helena:ClinicalConsequencesData",
    "kind": {
      "@id": "helena:kind",
      "@type": "xsd:string"
    },
    "eligible_variations": {
      "@id": "helena:eligible_variations",
      "@type": "xsd:integer"
    },
    "membership_rule": {
      "@id": "helena:membership_rule",
      "@type": "xsd:string"
    },
    "consequence_scope": {
      "@id": "helena:consequence_scope",
      "@type": "xsd:string"
    },
    "records": {
      "@id": "helena:records",
      "@container": "@list"
    },
    "ClinicalVariantExample": "helena:ClinicalVariantExample",
    "variation_id": {
      "@id": "helena:variation_id",
      "@type": "xsd:string"
    },
    "name": {
      "@id": "helena:name",
      "@type": "xsd:string"
    },
    "variant_type": {
      "@id": "helena:variant_type",
      "@type": "xsd:string"
    },
    "germline": {
      "@id": "helena:germline"
    },
    "germline_review_status": {
      "@id": "helena:germline_review_status"
    },
    "somatic_clinical_impact": {
      "@id": "helena:somatic_clinical_impact"
    },
    "somatic_review_status": {
      "@id": "helena:somatic_review_status"
    },
    "oncogenicity": {
      "@id": "helena:oncogenicity"
    },
    "oncogenicity_review_status": {
      "@id": "helena:oncogenicity_review_status"
    },
    "source_url": {
      "@id": "helena:source_url",
      "@type": "xsd:string"
    },
    "resolver_allele": {
      "@id": "helena:resolver_allele"
    },
    "resolver_status": {
      "@id": "helena:resolver_status",
      "@type": "xsd:string"
    },
    "ClinicalVariantsData": "helena:ClinicalVariantsData",
    "unique_variation_total": {
      "@id": "helena:unique_variation_total",
      "@type": "xsd:integer"
    },
    "variant_type_counts": {
      "@id": "helena:variant_type_counts",
      "@container": "@list"
    },
    "example_selection": {
      "@id": "helena:example_selection",
      "@type": "xsd:string"
    },
    "CodingSegment": "helena:CodingSegment",
    "rank": {
      "@id": "helena:rank",
      "@type": "xsd:integer"
    },
    "phase": {
      "@id": "helena:phase",
      "@type": "xsd:integer"
    },
    "ConstraintData": "helena:ConstraintData",
    "ConstraintMetric": "helena:ConstraintMetric",
    "source_gene_id": {
      "@id": "helena:source_gene_id"
    },
    "source_gene_namespace": {
      "@id": "helena:source_gene_namespace"
    },
    "source_canonical": {
      "@id": "helena:source_canonical"
    },
    "source_mane_select": {
      "@id": "helena:source_mane_select"
    },
    "selection_rule": {
      "@id": "helena:selection_rule",
      "@type": "xsd:string"
    },
    "oe_lof": {
      "@id": "helena:oe_lof"
    },
    "oe_lof_lower": {
      "@id": "helena:oe_lof_lower"
    },
    "oe_lof_upper": {
      "@id": "helena:oe_lof_upper"
    },
    "observed_lof": {
      "@id": "helena:observed_lof"
    },
    "oe_missense": {
      "@id": "helena:oe_missense"
    },
    "oe_missense_lower": {
      "@id": "helena:oe_missense_lower"
    },
    "oe_missense_upper": {
      "@id": "helena:oe_missense_upper"
    },
    "observed_missense": {
      "@id": "helena:observed_missense"
    },
    "expected_lof": {
      "@id": "helena:expected_lof"
    },
    "missense_z": {
      "@id": "helena:missense_z"
    },
    "quality_flags": {
      "@id": "helena:quality_flags",
      "@container": "@list"
    },
    "expected_synonymous": {
      "@id": "helena:expected_synonymous"
    },
    "expected_missense": {
      "@id": "helena:expected_missense"
    },
    "display_status": {
      "@id": "helena:display_status",
      "@type": "xsd:string"
    },
    "gene_flags": {
      "@id": "helena:gene_flags",
      "@container": "@list"
    },
    "constraint_flags": {
      "@id": "helena:constraint_flags",
      "@container": "@list"
    },
    "reported_metrics": {
      "@id": "helena:reported_metrics"
    },
    "ConversionMetadataSchema": "helena:ConversionMetadataSchema",
    "start_time": {
      "@id": "helena:start_time"
    },
    "elapsed_seconds": {
      "@id": "helena:elapsed_seconds"
    },
    "elapsed_human": {
      "@id": "helena:elapsed_human"
    },
    "successful_chromosomes": {
      "@id": "helena:successful_chromosomes"
    },
    "failed_chromosomes": {
      "@id": "helena:failed_chromosomes"
    },
    "CreateFamilyFromJointVcfRequest": "helena:CreateFamilyFromJointVcfRequest",
    "vcf_file_path": {
      "@id": "helena:vcf_file_path",
      "@type": "xsd:string"
    },
    "family_name": {
      "@id": "helena:family_name"
    },
    "family_notes": {
      "@id": "helena:family_notes"
    },
    "inheritance_hypothesis": {
      "@id": "helena:inheritance_hypothesis"
    },
    "sample_role_mapping": {
      "@id": "helena:sample_role_mapping",
      "@container": "@list"
    },
    "staging_session_id": {
      "@id": "helena:staging_session_id"
    },
    "filtering_preset": {
      "@id": "helena:filtering_preset",
      "@type": "xsd:string"
    },
    "CreateFamilyFromSeparateVcfsRequest": "helena:CreateFamilyFromSeparateVcfsRequest",
    "members": {
      "@id": "helena:members",
      "@container": "@list"
    },
    "CreateNoteRequest": "helena:CreateNoteRequest",
    "text": {
      "@id": "helena:text",
      "@type": "xsd:string"
    },
    "CreateOverrideRequest": "helena:CreateOverrideRequest",
    "new_class": {
      "@id": "helena:new_class",
      "@type": "xsd:string"
    },
    "pipeline_class": {
      "@id": "helena:pipeline_class",
      "@type": "xsd:string"
    },
    "reason": {
      "@id": "helena:reason",
      "@type": "xsd:string"
    },
    "CurationResponse": "helena:CurationResponse",
    "curation_fields": {
      "@id": "helena:curation_fields",
      "@type": "@id"
    },
    "curation_state": {
      "@id": "helena:curation_state",
      "@type": "@id"
    },
    "effective_classification": {
      "@id": "helena:effective_classification",
      "@type": "@id"
    },
    "curated_by": {
      "@id": "helena:curated_by"
    },
    "audit_event_id": {
      "@id": "helena:audit_event_id"
    },
    "validation_warnings": {
      "@id": "helena:validation_warnings",
      "@container": "@list"
    },
    "CurationStateResponse": "helena:CurationStateResponse",
    "has_curated_flags": {
      "@id": "helena:has_curated_flags"
    },
    "strength_enums": {
      "@id": "helena:strength_enums"
    },
    "pp1_disqualified": {
      "@id": "helena:pp1_disqualified",
      "@type": "xsd:boolean"
    },
    "curated_contributed": {
      "@id": "helena:curated_contributed",
      "@type": "xsd:boolean"
    },
    "emitted_curated_criteria": {
      "@id": "helena:emitted_curated_criteria",
      "@container": "@list"
    },
    "CytobandBand": "helena:CytobandBand",
    "start_pos": {
      "@id": "helena:start_pos",
      "@type": "xsd:integer"
    },
    "end_pos": {
      "@id": "helena:end_pos",
      "@type": "xsd:integer"
    },
    "band_name": {
      "@id": "helena:band_name"
    },
    "gie_stain": {
      "@id": "helena:gie_stain"
    },
    "arm": {
      "@id": "helena:arm"
    },
    "CytobandResponse": "helena:CytobandResponse",
    "coord_system": {
      "@id": "helena:coord_system",
      "@type": "xsd:string"
    },
    "bands": {
      "@id": "helena:bands",
      "@container": "@list"
    },
    "DatabaseDetailResponse": "helena:DatabaseDetailResponse",
    "display_name": {
      "@id": "helena:display_name",
      "@type": "xsd:string"
    },
    "description": {
      "@id": "helena:description"
    },
    "priority": {
      "@id": "helena:priority",
      "@type": "xsd:integer"
    },
    "enabled": {
      "@id": "helena:enabled",
      "@type": "xsd:boolean"
    },
    "license_required": {
      "@id": "helena:license_required",
      "@type": "xsd:boolean"
    },
    "vep_required": {
      "@id": "helena:vep_required",
      "@type": "xsd:boolean"
    },
    "source": {
      "@id": "helena:source",
      "@type": "@id"
    },
    "parquet": {
      "@id": "helena:parquet",
      "@type": "@id"
    },
    "freshness": {
      "@id": "helena:freshness",
      "@type": "@id"
    },
    "validation": {
      "@id": "helena:validation",
      "@type": "@id"
    },
    "detail": {
      "@id": "helena:detail"
    },
    "DatabaseStatusSchema": "helena:DatabaseStatusSchema",
    "DeleteBackupResponse": "helena:DeleteBackupResponse",
    "deleted": {
      "@id": "helena:deleted",
      "@type": "xsd:boolean"
    },
    "DiscordanceRequest": "helena:DiscordanceRequest",
    "checks": {
      "@id": "helena:checks"
    },
    "max_results_per_check": {
      "@id": "helena:max_results_per_check",
      "@type": "xsd:integer"
    },
    "DiscordanceResponse": "helena:DiscordanceResponse",
    "classifier_version_current": {
      "@id": "helena:classifier_version_current",
      "@type": "xsd:string"
    },
    "classifier_version_data": {
      "@id": "helena:classifier_version_data",
      "@type": "xsd:string"
    },
    "total_variants_analyzed": {
      "@id": "helena:total_variants_analyzed",
      "@type": "xsd:integer"
    },
    "total_discordances": {
      "@id": "helena:total_discordances",
      "@type": "xsd:integer"
    },
    "summary": {
      "@id": "helena:summary"
    },
    "format_warnings": {
      "@id": "helena:format_warnings",
      "@container": "@list"
    },
    "DiscordanceVariantResponse": "helena:DiscordanceVariantResponse",
    "acmg_criteria": {
      "@id": "helena:acmg_criteria"
    },
    "severity": {
      "@id": "helena:severity",
      "@type": "xsd:string"
    },
    "extra": {
      "@id": "helena:extra"
    },
    "DiscoveryRecord": "helena:DiscoveryRecord",
    "work_id": {
      "@id": "helena:work_id",
      "@type": "xsd:string"
    },
    "pmid": {
      "@id": "helena:pmid"
    },
    "title": {
      "@id": "helena:title",
      "@type": "xsd:string"
    },
    "journal": {
      "@id": "helena:journal"
    },
    "publication_date": {
      "@id": "helena:publication_date"
    },
    "doi": {
      "@id": "helena:doi"
    },
    "rank_score": {
      "@id": "helena:rank_score",
      "@type": "xsd:decimal"
    },
    "relation": {
      "@id": "helena:relation",
      "@type": "xsd:string"
    },
    "DiseaseAssertion": "helena:DiseaseAssertion",
    "assertion_id": {
      "@id": "helena:assertion_id",
      "@type": "xsd:string"
    },
    "disease_id": {
      "@id": "helena:disease_id",
      "@type": "xsd:string"
    },
    "inheritance": {
      "@id": "helena:inheritance"
    },
    "curation_date": {
      "@id": "helena:curation_date"
    },
    "panel": {
      "@id": "helena:panel"
    },
    "criteria_version": {
      "@id": "helena:criteria_version"
    },
    "report_url": {
      "@id": "helena:report_url",
      "@type": "xsd:string"
    },
    "mechanism": {
      "@id": "helena:mechanism"
    },
    "allelic_requirement": {
      "@id": "helena:allelic_requirement"
    },
    "mirrored_assertion_id": {
      "@id": "helena:mirrored_assertion_id"
    },
    "original_disease_id": {
      "@id": "helena:original_disease_id"
    },
    "submitter": {
      "@id": "helena:submitter"
    },
    "mechanism_support": {
      "@id": "helena:mechanism_support"
    },
    "variant_consequence": {
      "@id": "helena:variant_consequence"
    },
    "pmids": {
      "@id": "helena:pmids",
      "@container": "@list"
    },
    "DiseaseContextRequest": "helena:DiseaseContextRequest",
    "rows": {
      "@id": "helena:rows",
      "@container": "@list"
    },
    "DiseaseContextRow": "helena:DiseaseContextRow",
    "phenotype_terms": {
      "@id": "helena:phenotype_terms",
      "@container": "@list"
    },
    "DiseaseData": "helena:DiseaseData",
    "DiseaseRequest": "helena:DiseaseRequest",
    "offset": {
      "@id": "helena:offset",
      "@type": "xsd:integer"
    },
    "disease": {
      "@id": "helena:disease",
      "@type": "xsd:string"
    },
    "DistributionBin": "helena:DistributionBin",
    "count": {
      "@id": "helena:count",
      "@type": "xsd:integer"
    },
    "DosageAssertion": "helena:DosageAssertion",
    "evaluated_at": {
      "@id": "helena:evaluated_at"
    },
    "DosageData": "helena:DosageData",
    "EffectiveClassificationResponse": "helena:EffectiveClassificationResponse",
    "pipeline_acmg_class": {
      "@id": "helena:pipeline_acmg_class",
      "@type": "xsd:string"
    },
    "pipeline_criteria": {
      "@id": "helena:pipeline_criteria",
      "@type": "xsd:string"
    },
    "evaluator_acmg_class": {
      "@id": "helena:evaluator_acmg_class"
    },
    "evaluator_criteria": {
      "@id": "helena:evaluator_criteria",
      "@type": "xsd:string"
    },
    "cat_m_messages": {
      "@id": "helena:cat_m_messages",
      "@container": "@list"
    },
    "Exon": "helena:Exon",
    "ExpressionData": "helena:ExpressionData",
    "ExpressionRecord": "helena:ExpressionRecord",
    "ensembl_gene_id": {
      "@id": "helena:ensembl_gene_id",
      "@type": "xsd:string"
    },
    "tissue_id": {
      "@id": "helena:tissue_id",
      "@type": "xsd:string"
    },
    "tissue_label": {
      "@id": "helena:tissue_label",
      "@type": "xsd:string"
    },
    "median_tpm": {
      "@id": "helena:median_tpm"
    },
    "unit": {
      "@id": "helena:unit",
      "@type": "xsd:string"
    },
    "statistic": {
      "@id": "helena:statistic",
      "@type": "xsd:string"
    },
    "sample_count": {
      "@id": "helena:sample_count"
    },
    "category_type": {
      "@id": "helena:category_type",
      "@type": "xsd:string"
    },
    "FamilyFromJointVcfResponse": "helena:FamilyFromJointVcfResponse",
    "family": {
      "@id": "helena:family",
      "@type": "@id"
    },
    "session_ids": {
      "@id": "helena:session_ids",
      "@container": "@list"
    },
    "FamilyPublicResponse": "helena:FamilyPublicResponse",
    "id": {
      "@id": "helena:id",
      "@type": "xsd:string"
    },
    "created_by": {
      "@id": "helena:created_by",
      "@type": "xsd:string"
    },
    "organization_id": {
      "@id": "helena:organization_id",
      "@type": "xsd:string"
    },
    "notes": {
      "@id": "helena:notes"
    },
    "updated_at": {
      "@id": "helena:updated_at"
    },
    "FlagVariantRequest": "helena:FlagVariantRequest",
    "comment": {
      "@id": "helena:comment",
      "@type": "xsd:string"
    },
    "FlagVariantResponse": "helena:FlagVariantResponse",
    "email_sent": {
      "@id": "helena:email_sent",
      "@type": "xsd:boolean"
    },
    "message": {
      "@id": "helena:message",
      "@type": "xsd:string"
    },
    "Freshness": "helena:Freshness",
    "last_source_check": {
      "@id": "helena:last_source_check"
    },
    "stale": {
      "@id": "helena:stale",
      "@type": "xsd:boolean"
    },
    "stale_reason": {
      "@id": "helena:stale_reason"
    },
    "FreshnessSchema": "helena:FreshnessSchema",
    "source_age_days": {
      "@id": "helena:source_age_days"
    },
    "parquet_age_days": {
      "@id": "helena:parquet_age_days"
    },
    "cache_ttl_days": {
      "@id": "helena:cache_ttl_days"
    },
    "is_within_ttl": {
      "@id": "helena:is_within_ttl"
    },
    "suggested_action": {
      "@id": "helena:suggested_action"
    },
    "GeneAggregated": "helena:GeneAggregated",
    "variant_count": {
      "@id": "helena:variant_count",
      "@type": "xsd:integer"
    },
    "best_acmg_class": {
      "@id": "helena:best_acmg_class"
    },
    "best_acmg_priority": {
      "@id": "helena:best_acmg_priority",
      "@type": "xsd:integer"
    },
    "best_impact": {
      "@id": "helena:best_impact"
    },
    "best_priority_score": {
      "@id": "helena:best_priority_score"
    },
    "pathogenic_count": {
      "@id": "helena:pathogenic_count",
      "@type": "xsd:integer"
    },
    "likely_pathogenic_count": {
      "@id": "helena:likely_pathogenic_count",
      "@type": "xsd:integer"
    },
    "vus_count": {
      "@id": "helena:vus_count",
      "@type": "xsd:integer"
    },
    "likely_benign_count": {
      "@id": "helena:likely_benign_count"

# --- truncated at 32 KB (47 KB total) ---
# Full source: https://artifacts.apis.io/helena-bio/json-ld/helena-bio-context.jsonld