Utrecht University research API

openapi: 3.0.0
info:
  description: Yoda core ruleset containing iRODS and Python rules and policies useful for all Yoda environments.
  contact:
    email: l.r.westerhof@uu.nl
  version: 2.1.0
  title: Yoda core admin research API
servers:
- url: https://portal.yoda.test/api
  description: Local Yoda development server
security:
- cookieAuth: []
- basicAuth: []
tags:
- name: research
paths:
  /research_folder_add:
    post:
      tags:
      - research
      summary: 'Add a new folder to a research folder.

        '
      requestBody:
        required: true
        content:
          application/json:
            schema:
              type: object
              required:
              - coll
              - new_folder_name
              properties:
                coll:
                  type: string
                  description: Collection to create new folder in
                  default: null
                  nullable: false
                new_folder_name:
                  type: string
                  description: Name of the new folder
                  default: null
                  nullable: false
      responses:
        '200':
          description: Success
          content:
            application/json:
              schema:
                type: object
                properties:
                  status:
                    type: string
                  status_info:
                    type: string
                    nullable: true
                  data:
                    nullable: true
        '400':
          $ref: '#/components/responses/status_400'
        '500':
          $ref: '#/components/responses/status_500'
  /research_folder_copy:
    post:
      tags:
      - research
      summary: 'Copy a folder in a research folder.

        '
      requestBody:
        required: true
        content:
          application/json:
            schema:
              type: object
              required:
              - folder_path
              - new_folder_path
              properties:
                folder_path:
                  type: string
                  description: Path to the folder to copy
                  default: null
                  nullable: false
                new_folder_path:
                  type: string
                  description: Path to the new copy of the folder
                  default: null
                  nullable: false
                overwrite:
                  type: boolean
                  description: Overwrite folder if it already exists
                  default: 'False'
                  nullable: false
      responses:
        '200':
          description: Success
          content:
            application/json:
              schema:
                type: object
                properties:
                  status:
                    type: string
                  status_info:
                    type: string
                    nullable: true
                  data:
                    nullable: true
        '400':
          $ref: '#/components/responses/status_400'
        '500':
          $ref: '#/components/responses/status_500'
  /research_folder_move:
    post:
      tags:
      - research
      summary: 'Move a folder in a research folder.

        '
      requestBody:
        required: true
        content:
          application/json:
            schema:
              type: object
              required:
              - folder_path
              - new_folder_path
              properties:
                folder_path:
                  type: string
                  description: Path to the folder to move
                  default: null
                  nullable: false
                new_folder_path:
                  type: string
                  description: Path to the new folder
                  default: null
                  nullable: false
                overwrite:
                  type: boolean
                  description: Overwrite folder if it already exists
                  default: 'False'
                  nullable: false
      responses:
        '200':
          description: Success
          content:
            application/json:
              schema:
                type: object
                properties:
                  status:
                    type: string
                  status_info:
                    type: string
                    nullable: true
                  data:
                    nullable: true
        '400':
          $ref: '#/components/responses/status_400'
        '500':
          $ref: '#/components/responses/status_500'
  /research_folder_rename:
    post:
      tags:
      - research
      summary: 'Rename an existing research folder.

        '
      requestBody:
        required: true
        content:
          application/json:
            schema:
              type: object
              required:
              - new_folder_name
              - coll
              - org_folder_name
              properties:
                new_folder_name:
                  type: string
                  description: New folder name
                  default: null
                  nullable: false
                coll:
                  type: string
                  description: Parent collection of folder
                  default: null
                  nullable: false
                org_folder_name:
                  type: string
                  description: Current name of the folder
                  default: null
                  nullable: false
      responses:
        '200':
          description: Success
          content:
            application/json:
              schema:
                type: object
                properties:
                  status:
                    type: string
                  status_info:
                    type: string
                    nullable: true
                  data:
                    nullable: true
        '400':
          $ref: '#/components/responses/status_400'
        '500':
          $ref: '#/components/responses/status_500'
  /research_folder_delete:
    post:
      tags:
      - research
      summary: 'Delete a research folder.

        '
      requestBody:
        required: true
        content:
          application/json:
            schema:
              type: object
              required:
              - coll
              - folder_name
              properties:
                coll:
                  type: string
                  description: Parent collection of folder to delete
                  default: null
                  nullable: false
                folder_name:
                  type: string
                  description: Name of folder to delete
                  default: null
                  nullable: false
      responses:
        '200':
          description: Success
          content:
            application/json:
              schema:
                type: object
                properties:
                  status:
                    type: string
                  status_info:
                    type: string
                    nullable: true
                  data:
                    nullable: true
        '400':
          $ref: '#/components/responses/status_400'
        '500':
          $ref: '#/components/responses/status_500'
  /research_list_temporary_files:
    post:
      tags:
      - research
      summary: 'Get list of temporary files to be cleaned up.

        '
      requestBody:
        required: true
        content:
          application/json:
            schema:
              type: object
              required:
              - coll
              properties:
                coll:
                  type: string
                  description: Parent collection of folder to delete
                  default: null
                  nullable: false
      responses:
        '200':
          description: Success
          content:
            application/json:
              schema:
                type: object
                properties:
                  status:
                    type: string
                  status_info:
                    type: string
                    nullable: true
                  data:
                    nullable: true
        '400':
          $ref: '#/components/responses/status_400'
        '500':
          $ref: '#/components/responses/status_500'
  /research_file_copy:
    post:
      tags:
      - research
      summary: 'Copy a file in a research folder.

        '
      requestBody:
        required: true
        content:
          application/json:
            schema:
              type: object
              required:
              - filepath
              - new_filepath
              properties:
                filepath:
                  type: string
                  description: Path to the file to copy
                  default: null
                  nullable: false
                new_filepath:
                  type: string
                  description: Path to the new copy of the file
                  default: null
                  nullable: false
                overwrite:
                  type: boolean
                  description: Overwrite file if it already exists
                  default: 'False'
                  nullable: false
      responses:
        '200':
          description: Success
          content:
            application/json:
              schema:
                type: object
                properties:
                  status:
                    type: string
                  status_info:
                    type: string
                    nullable: true
                  data:
                    nullable: true
        '400':
          $ref: '#/components/responses/status_400'
        '500':
          $ref: '#/components/responses/status_500'
  /research_file_rename:
    post:
      tags:
      - research
      summary: 'Rename a file in a research folder.

        '
      requestBody:
        required: true
        content:
          application/json:
            schema:
              type: object
              required:
              - new_file_name
              - coll
              - org_file_name
              properties:
                new_file_name:
                  type: string
                  description: New file name
                  default: null
                  nullable: false
                coll:
                  type: string
                  description: Parent collection of file
                  default: null
                  nullable: false
                org_file_name:
                  type: string
                  description: Current name of the file
                  default: null
                  nullable: false
      responses:
        '200':
          description: Success
          content:
            application/json:
              schema:
                type: object
                properties:
                  status:
                    type: string
                  status_info:
                    type: string
                    nullable: true
                  data:
                    nullable: true
        '400':
          $ref: '#/components/responses/status_400'
        '500':
          $ref: '#/components/responses/status_500'
  /research_file_move:
    post:
      tags:
      - research
      summary: 'Move a file in a research folder.

        '
      requestBody:
        required: true
        content:
          application/json:
            schema:
              type: object
              required:
              - filepath
              - new_filepath
              properties:
                filepath:
                  type: string
                  description: Path to the file to move
                  default: null
                  nullable: false
                new_filepath:
                  type: string
                  description: Path to the new location of the file
                  default: null
                  nullable: false
                overwrite:
                  type: boolean
                  description: Overwrite file if it already exists
                  default: 'False'
                  nullable: false
      responses:
        '200':
          description: Success
          content:
            application/json:
              schema:
                type: object
                properties:
                  status:
                    type: string
                  status_info:
                    type: string
                    nullable: true
                  data:
                    nullable: true
        '400':
          $ref: '#/components/responses/status_400'
        '500':
          $ref: '#/components/responses/status_500'
  /research_file_delete:
    post:
      tags:
      - research
      summary: 'Delete a file in a research folder.

        '
      requestBody:
        required: true
        content:
          application/json:
            schema:
              type: object
              required:
              - coll
              - file_name
              properties:
                coll:
                  type: string
                  description: Parent collection of file to delete
                  default: null
                  nullable: false
                file_name:
                  type: string
                  description: Name of file to delete
                  default: null
                  nullable: false
      responses:
        '200':
          description: Success
          content:
            application/json:
              schema:
                type: object
                properties:
                  status:
                    type: string
                  status_info:
                    type: string
                    nullable: true
                  data:
                    nullable: true
        '400':
          $ref: '#/components/responses/status_400'
        '500':
          $ref: '#/components/responses/status_500'
  /research_system_metadata:
    post:
      tags:
      - research
      summary: 'Return collection statistics as JSON.

        '
      requestBody:
        required: true
        content:
          application/json:
            schema:
              type: object
              required:
              - coll
              properties:
                coll:
                  type: string
                  description: Research collection
                  default: null
                  nullable: false
      responses:
        '200':
          description: Success
          content:
            application/json:
              schema:
                type: object
                properties:
                  status:
                    type: string
                  status_info:
                    type: string
                    nullable: true
                  data:
                    nullable: true
        '400':
          $ref: '#/components/responses/status_400'
        '500':
          $ref: '#/components/responses/status_500'
  /research_collection_details:
    post:
      tags:
      - research
      summary: 'Return details of a research collection.

        '
      requestBody:
        required: true
        content:
          application/json:
            schema:
              type: object
              required:
              - path
              properties:
                path:
                  type: string
                  description: Path to research collection
                  default: null
                  nullable: false
      responses:
        '200':
          description: Success
          content:
            application/json:
              schema:
                type: object
                properties:
                  status:
                    type: string
                  status_info:
                    type: string
                    nullable: true
                  data:
                    nullable: true
        '400':
          $ref: '#/components/responses/status_400'
        '500':
          $ref: '#/components/responses/status_500'
  /research_manifest:
    post:
      tags:
      - research
      summary: 'Produce a manifest of data objects in a collection.

        '
      requestBody:
        required: true
        content:
          application/json:
            schema:
              type: object
              required:
              - coll
              properties:
                coll:
                  type: string
                  description: Parent collection of data objects to include
                  default: null
                  nullable: false
                empty_colls:
                  type: boolean
                  description: Include empty collections in manifest
                  default: 'False'
                  nullable: false
      responses:
        '200':
          description: Success
          content:
            application/json:
              schema:
                type: object
                properties:
                  status:
                    type: string
                  status_info:
                    type: string
                    nullable: true
                  data:
                    nullable: true
        '400':
          $ref: '#/components/responses/status_400'
        '500':
          $ref: '#/components/responses/status_500'
components:
  responses:
    status_500:
      description: Internal error
      content:
        application/json:
          schema:
            $ref: '#/components/schemas/result_error'
    status_400:
      description: Bad request
      content:
        application/json:
          schema:
            $ref: '#/components/schemas/result_error'
  schemas:
    result_error:
      type: object
      properties:
        status:
          type: string
          description: Holds an error ID
        status_info:
          type: string
          description: Holds a human-readable error description
        data:
          description: empty
          nullable: true
          type: object
  securitySchemes:
    cookieAuth:
      in: cookie
      type: apiKey
      name: yoda_session
    basicAuth:
      type: http
      scheme: basic