Seqera Labs Ga4gh API
GA4GH workflow execution service runs
Work with this as data
Every API here is available over the APIs.io API and to AI agents over MCP.
MCP server
One button, every client — Claude, Cursor, VS Code and the rest.
https://apis.io/mcp
Tools for apis
7 MCP tools reach this
find_apisBrowse and filter every API in the catalog.get_api_artifactsOne API's artifacts, grouped by type.get_openapiThe primary OpenAPI for this API.find_similar_apisAPIs that look like this one.apis_io_searchSTART HERE — APIs, providers and tags for one query, each with its total.resolveTurn a domain, URL or GitHub org into the provider it belongs to.find_cohortsEvery scored population of providers in the catalog.
Call it yourself
curl for this page
This API
curl "https://apis.io/api/v1/apis/seqera-labs:seqera-labs-ga4gh-api"
All apis
curl "https://apis.io/api/v1/apis?limit=25"Calls without X-API-Key need no key. Calls with it need a paid plan — get a key.
Get an API key
Free tier, no form to fill in. Signing in shares your email address with us — we store it to create your key and to recognise you if you sign in with another provider. See our Privacy Policy and Terms.
A second provider on the same verified email joins the account you already have.
OpenAPI Specification
openapi: 3.2.0
info:
contact:
email: info@seqera.io
url: https://seqera.io
description: Seqera Platform services API
title: Seqera Ga4gh API
version: 1.181.0
tags:
- description: GA4GH workflow execution service runs
name: ga4gh
paths:
/ga4gh/wes/v1/runs:
get:
description: Uses the GA4GH workflow execution service API to list all run records.
operationId: Ga4ghRunList
parameters:
- description: Page size
in: query
name: page_size
schema:
format: int32
type: integer
- description: Page token
in: query
name: page_token
schema:
type: string
responses:
'200':
content:
application/json:
schema:
$ref: '#/components/schemas/RunListResponse'
description: OK
'400':
content:
application/json:
schema:
$ref: '#/components/schemas/WesErrorResponse'
description: Bad request
'403':
description: Operation not allowed
summary: 'GA4GH: List runs'
tags:
- ga4gh
post:
description: Uses the GA4GH workflow execution service API to launch a new run. Runs are launched in the user workspace context by default. To launch in an organization workspace context, include the `workspaceId` in `workflow_engine_parameters`. Runs are launched with the workspace primary compute environment by default. To launch with a different compute environment, include the `computeEnvId` in `workflow_engine_parameters`.
operationId: Ga4ghRunCreate
requestBody:
content:
application/json:
schema:
$ref: '#/components/schemas/RunRequest'
multipart/form-data:
schema:
$ref: '#/components/schemas/RunRequest'
description: Run request
required: true
responses:
'200':
content:
application/json:
schema:
$ref: '#/components/schemas/RunId'
description: OK
'400':
content:
application/json:
schema:
$ref: '#/components/schemas/WesErrorResponse'
description: Bad request
'403':
description: Operation not allowed
summary: 'GA4GH: Launch run'
tags:
- ga4gh
/ga4gh/wes/v1/runs/{run_id}:
get:
description: Uses the GA4GH workflow execution service API to retrieve the details of the run assoiated with the given `run_id`.
operationId: Ga4ghRunDescribe
parameters:
- description: Run string identifier
in: path
name: run_id
required: true
schema:
type: string
responses:
'200':
content:
application/json:
schema:
$ref: '#/components/schemas/RunLog'
description: OK
'400':
content:
application/json:
schema:
$ref: '#/components/schemas/WesErrorResponse'
description: Bad request
'403':
description: Operation not allowed
summary: 'GA4GH: Describe run'
tags:
- ga4gh
/ga4gh/wes/v1/runs/{run_id}/cancel:
post:
description: Uses the GA4GH workflow execution service API to cancel the run associated with the given `run_id`.
operationId: Ga4ghRunCancel
parameters:
- description: Run string identifier
in: path
name: run_id
required: true
schema:
type: string
requestBody:
content:
application/json:
schema:
$ref: '#/components/schemas/EmptyBodyRequest'
responses:
'200':
content:
application/json:
schema:
$ref: '#/components/schemas/RunId'
description: OK
'400':
content:
application/json:
schema:
$ref: '#/components/schemas/WesErrorResponse'
description: Bad request
'403':
description: Operation not allowed
summary: 'GA4GH: Cancel run'
tags:
- ga4gh
/ga4gh/wes/v1/runs/{run_id}/status:
get:
description: Uses the GA4GH workflow execution service API to retrieve the status of the run associated with the given `run_id`.
operationId: Ga4ghRunStatus
parameters:
- description: Run string identifier
in: path
name: run_id
required: true
schema:
type: string
responses:
'200':
content:
application/json:
schema:
$ref: '#/components/schemas/RunStatus'
description: OK
'400':
content:
application/json:
schema:
$ref: '#/components/schemas/WesErrorResponse'
description: Bad request
'403':
description: Operation not allowed
summary: 'GA4GH: Retrieve run status'
tags:
- ga4gh
/ga4gh/wes/v1/service-info:
get:
operationId: Ga4ghServiceInfo
responses:
'200':
content:
application/json:
schema:
$ref: '#/components/schemas/WesServiceInfo'
description: OK
'400':
content:
application/json:
schema:
$ref: '#/components/schemas/WesErrorResponse'
description: Bad request
'403':
description: Operation not allowed
summary: GA4GH workflow execution service API info
tags:
- ga4gh
components:
schemas:
DefaultWorkflowEngineParameter:
properties:
default_value:
type: string
name:
type: string
type:
type: string
type: object
RunStatus:
properties:
run_id:
type: string
state:
$ref: '#/components/schemas/State'
type: object
WesServiceInfo:
properties:
auth_instructions_url:
type: string
contact_info_url:
type: string
default_workflow_engine_parameters:
items:
$ref: '#/components/schemas/DefaultWorkflowEngineParameter'
type: array
supported_filesystem_protocols:
items:
type: string
type: array
supported_wes_versions:
items:
type: string
type: array
system_state_counts:
additionalProperties:
format: int64
type: integer
type: object
tags:
additionalProperties:
type: string
type: object
workflow_engine_versions:
additionalProperties:
type: string
type: object
workflow_type_versions:
additionalProperties:
$ref: '#/components/schemas/WorkflowTypeVersion'
type: object
type: object
WorkflowTypeVersion:
properties:
workflow_type_version:
items:
type: string
type: array
type: object
RunRequest:
properties:
tags:
additionalProperties:
type: string
type: object
workflow_engine_parameters:
additionalProperties:
type: string
type: object
workflow_params:
type: string
workflow_type:
type: string
workflow_type_version:
type: string
workflow_url:
type: string
type: object
RunListResponse:
properties:
next_page_token:
type: string
runs:
items:
$ref: '#/components/schemas/RunStatus'
type: array
type: object
RunLog:
properties:
outputs:
type: object
request:
$ref: '#/components/schemas/RunRequest'
run_id:
type: string
run_log:
$ref: '#/components/schemas/Log'
state:
$ref: '#/components/schemas/State'
task_logs:
items:
$ref: '#/components/schemas/Log'
type: array
type: object
State:
enum:
- UNKNOWN
- QUEUED
- INITIALIZING
- RUNNING
- PAUSED
- COMPLETE
- EXECUTOR_ERROR
- SYSTEM_ERROR
- CANCELED
- CANCELING
type: string
RunId:
properties:
run_id:
type: string
type: object
EmptyBodyRequest:
type: object
WesErrorResponse:
properties:
msg:
type: string
status_code:
format: int32
type: integer
type: object
Log:
properties:
cmd:
items:
type: string
type: array
end_time:
type: string
exit_code:
format: int32
type: integer
name:
type: string
start_time:
type: string
stderr:
type: string
stdout:
type: string
type: object
securitySchemes:
BearerAuth:
bearerFormat: jwt
scheme: bearer
type: http
x-provenance:
method: harvested
publisher: Seqera Labs
source: https://cloud.seqera.io/openapi/seqera-api-latest.yml
note: split by refine-openapis from the provider's own published document, verified by fetch (openapi/_original/*.fetch.json);
stamped by stamp-openapi-provenance.py (roadmap#793)