Seqera Labs

Seqera Labs ga4gh API

GA4GH workflow execution service runs

GitHub OpenAPI

Operations 6

GET /ga4gh/wes/v1/runs GA4GH: List runs #
POST /ga4gh/wes/v1/runs GA4GH: Launch run #
GET /ga4gh/wes/v1/runs/{run_id} GA4GH: Describe run #
POST /ga4gh/wes/v1/runs/{run_id}/cancel GA4GH: Cancel run #
GET /ga4gh/wes/v1/runs/{run_id}/status GA4GH: Retrieve run status #
GET /ga4gh/wes/v1/service-info GA4GH workflow execution service API info #

Documentation

📖
Documentation
https://docs.seqera.io/platform-cloud/api/overview
📖
APIReference
https://docs.seqera.io/platform-api/
📖
Authentication
https://raw.githubusercontent.com/api-evangelist/seqera-labs/refs/heads/main/authentication/seqera-labs-authentication.yml

Specifications

⚙
OpenAPI
https://raw.githubusercontent.com/api-evangelist/seqera-labs/refs/heads/main/openapi/seqera-labs-ga4gh-api-openapi.yml

Other Resources

🔗
ErrorCatalog
https://raw.githubusercontent.com/api-evangelist/seqera-labs/refs/heads/main/errors/seqera-labs-problem-types.yml
🔗
DataModel
https://raw.githubusercontent.com/api-evangelist/seqera-labs/refs/heads/main/data-model/seqera-labs-data-model.yml

Work with this as data

Every API here is available over the APIs.io API and to AI agents over MCP.

MCP server

One button, every client — Claude, Cursor, VS Code and the rest.

https://apis.io/mcp

Tools for apis

7 MCP tools reach this
  • find_apisBrowse and filter every API in the catalog.
  • get_api_artifactsOne API's artifacts, grouped by type.
  • get_openapiThe primary OpenAPI for this API.
  • find_similar_apisAPIs that look like this one.
  • apis_io_searchSTART HERE — APIs, providers and tags for one query, each with its total.
  • resolveTurn a domain, URL or GitHub org into the provider it belongs to.
  • find_cohortsEvery scored population of providers in the catalog.
All 92 tools →

Call it yourself

curl for this page
This API 
curl "https://apis.io/api/v1/apis/seqera-labs-ga4gh-api"
All apis 
curl "https://apis.io/api/v1/apis?limit=25"

Discovery needs no key. Ratings and market analysis are Pro.

Get an API key

Free tier, no email required.

GitHub Google LinkedIn

A second provider on the same verified email joins the account you already have.

OpenAPI Specification

seqera-labs-ga4gh-api-openapi.yml Raw ↑ 
openapi: 3.2.0
info:
  contact:
    email: info@seqera.io
    url: https://seqera.io
  description: Seqera Platform services API
  title: Seqera actions Ga4gh API
  version: 1.181.0
servers:
- url: https://api.cloud.seqera.io
  description: Base URL declared by the provider in apis.yml (roadmap#122).
tags:
- description: GA4GH workflow execution service runs
  name: ga4gh
paths:
  /ga4gh/wes/v1/runs:
    get:
      description: Uses the GA4GH workflow execution service API to list all run records.
      operationId: Ga4ghRunList
      parameters:
      - description: Page size
        in: query
        name: page_size
        schema:
          format: int32
          type: integer
      - description: Page token
        in: query
        name: page_token
        schema:
          type: string
      responses:
        '200':
          content:
            application/json:
              schema:
                $ref: '#/components/schemas/RunListResponse'
          description: OK
        '400':
          content:
            application/json:
              schema:
                $ref: '#/components/schemas/WesErrorResponse'
          description: Bad request
        '403':
          description: Operation not allowed
      summary: 'GA4GH: List runs'
      tags:
      - ga4gh
    post:
      description: Uses the GA4GH workflow execution service API to launch a new run. Runs are launched in the user workspace context by default. To launch in an organization workspace context, include the `workspaceId` in `workflow_engine_parameters`. Runs are launched with the workspace primary compute environment by default. To launch with a different compute environment, include the `computeEnvId` in `workflow_engine_parameters`.
      operationId: Ga4ghRunCreate
      requestBody:
        content:
          application/json:
            schema:
              $ref: '#/components/schemas/RunRequest'
          multipart/form-data:
            schema:
              $ref: '#/components/schemas/RunRequest'
        description: Run request
        required: true
      responses:
        '200':
          content:
            application/json:
              schema:
                $ref: '#/components/schemas/RunId'
          description: OK
        '400':
          content:
            application/json:
              schema:
                $ref: '#/components/schemas/WesErrorResponse'
          description: Bad request
        '403':
          description: Operation not allowed
      summary: 'GA4GH: Launch run'
      tags:
      - ga4gh
  /ga4gh/wes/v1/runs/{run_id}:
    get:
      description: Uses the GA4GH workflow execution service API to retrieve the details of the run assoiated with the given `run_id`.
      operationId: Ga4ghRunDescribe
      parameters:
      - description: Run string identifier
        in: path
        name: run_id
        required: true
        schema:
          type: string
      responses:
        '200':
          content:
            application/json:
              schema:
                $ref: '#/components/schemas/RunLog'
          description: OK
        '400':
          content:
            application/json:
              schema:
                $ref: '#/components/schemas/WesErrorResponse'
          description: Bad request
        '403':
          description: Operation not allowed
      summary: 'GA4GH: Describe run'
      tags:
      - ga4gh
  /ga4gh/wes/v1/runs/{run_id}/cancel:
    post:
      description: Uses the GA4GH workflow execution service API to cancel the run associated with the given `run_id`.
      operationId: Ga4ghRunCancel
      parameters:
      - description: Run string identifier
        in: path
        name: run_id
        required: true
        schema:
          type: string
      requestBody:
        content:
          application/json:
            schema:
              $ref: '#/components/schemas/EmptyBodyRequest'
      responses:
        '200':
          content:
            application/json:
              schema:
                $ref: '#/components/schemas/RunId'
          description: OK
        '400':
          content:
            application/json:
              schema:
                $ref: '#/components/schemas/WesErrorResponse'
          description: Bad request
        '403':
          description: Operation not allowed
      summary: 'GA4GH: Cancel run'
      tags:
      - ga4gh
  /ga4gh/wes/v1/runs/{run_id}/status:
    get:
      description: Uses the GA4GH workflow execution service API to retrieve the status of the run associated with the given `run_id`.
      operationId: Ga4ghRunStatus
      parameters:
      - description: Run string identifier
        in: path
        name: run_id
        required: true
        schema:
          type: string
      responses:
        '200':
          content:
            application/json:
              schema:
                $ref: '#/components/schemas/RunStatus'
          description: OK
        '400':
          content:
            application/json:
              schema:
                $ref: '#/components/schemas/WesErrorResponse'
          description: Bad request
        '403':
          description: Operation not allowed
      summary: 'GA4GH: Retrieve run status'
      tags:
      - ga4gh
  /ga4gh/wes/v1/service-info:
    get:
      operationId: Ga4ghServiceInfo
      responses:
        '200':
          content:
            application/json:
              schema:
                $ref: '#/components/schemas/WesServiceInfo'
          description: OK
        '400':
          content:
            application/json:
              schema:
                $ref: '#/components/schemas/WesErrorResponse'
          description: Bad request
        '403':
          description: Operation not allowed
      summary: GA4GH workflow execution service API info
      tags:
      - ga4gh
components:
  schemas:
    WesServiceInfo:
      properties:
        auth_instructions_url:
          type: string
        contact_info_url:
          type: string
        default_workflow_engine_parameters:
          items:
            $ref: '#/components/schemas/DefaultWorkflowEngineParameter'
          type: array
        supported_filesystem_protocols:
          items:
            type: string
          type: array
        supported_wes_versions:
          items:
            type: string
          type: array
        system_state_counts:
          additionalProperties:
            format: int64
            type: integer
          type: object
        tags:
          additionalProperties:
            type: string
          type: object
        workflow_engine_versions:
          additionalProperties:
            type: string
          type: object
        workflow_type_versions:
          additionalProperties:
            $ref: '#/components/schemas/WorkflowTypeVersion'
          type: object
      type: object
    RunStatus:
      properties:
        run_id:
          type: string
        state:
          $ref: '#/components/schemas/State'
      type: object
    RunRequest:
      properties:
        tags:
          additionalProperties:
            type: string
          type: object
        workflow_engine_parameters:
          additionalProperties:
            type: string
          type: object
        workflow_params:
          type: string
        workflow_type:
          type: string
        workflow_type_version:
          type: string
        workflow_url:
          type: string
      type: object
    RunLog:
      properties:
        outputs:
          type: object
        request:
          $ref: '#/components/schemas/RunRequest'
        run_id:
          type: string
        run_log:
          $ref: '#/components/schemas/Log'
        state:
          $ref: '#/components/schemas/State'
        task_logs:
          items:
            $ref: '#/components/schemas/Log'
          type: array
      type: object
    RunId:
      properties:
        run_id:
          type: string
      type: object
    RunListResponse:
      properties:
        next_page_token:
          type: string
        runs:
          items:
            $ref: '#/components/schemas/RunStatus'
          type: array
      type: object
    WorkflowTypeVersion:
      properties:
        workflow_type_version:
          items:
            type: string
          type: array
      type: object
    State:
      enum:
      - UNKNOWN
      - QUEUED
      - INITIALIZING
      - RUNNING
      - PAUSED
      - COMPLETE
      - EXECUTOR_ERROR
      - SYSTEM_ERROR
      - CANCELED
      - CANCELING
      type: string
    WesErrorResponse:
      properties:
        msg:
          type: string
        status_code:
          format: int32
          type: integer
      type: object
    DefaultWorkflowEngineParameter:
      properties:
        default_value:
          type: string
        name:
          type: string
        type:
          type: string
      type: object
    Log:
      properties:
        cmd:
          items:
            type: string
          type: array
        end_time:
          type: string
        exit_code:
          format: int32
          type: integer
        name:
          type: string
        start_time:
          type: string
        stderr:
          type: string
        stdout:
          type: string
      type: object
    EmptyBodyRequest:
      type: object
  securitySchemes:
    BearerAuth:
      bearerFormat: jwt
      scheme: bearer
      type: http