One Codex

One Codex Samples API

The Samples API from One Codex — 11 operation(s) for samples.

GitHub OpenAPI

Operations 13

GET /api/v1/samples GET samples instances #
POST /api/v1/samples/cancel_upload POST samples instances_cancel_upload #
POST /api/v1/samples/confirm_upload POST samples instances_confirm_upload #
POST /api/v1/samples/import POST samples instances_import #
POST /api/v1/samples/init_multipart_upload Start a multipart upload directly to S3 #
POST /api/v1/samples/init_upload POST samples instances_init_upload #
GET /api/v1/samples/organization GET samples instances_organization #
POST /api/v1/samples/preupload POST samples instances_preupload #
GET /api/v1/samples/public GET samples instances_public #
DELETE /api/v1/samples/{id} DELETE samples #
GET /api/v1/samples/{id} GET samples #
PATCH /api/v1/samples/{id} PATCH samples #
POST /api/v1/samples/{id}/download_uri POST samples download_uri #

Documentation

📖
Authentication
https://raw.githubusercontent.com/api-evangelist/one-codex/refs/heads/main/authentication/one-codex-authentication.yml

Specifications

⚙
OpenAPI
https://raw.githubusercontent.com/api-evangelist/one-codex/refs/heads/main/openapi/one-codex-samples-api-openapi.yml

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OpenAPI Specification

one-codex-samples-api-openapi.yml Raw ↑ 
openapi: 3.2.0
info:
  description: The One Codex API (v1) -- programmatic access to One Codex's suite of microbial genomics data storage, analysis, and query tools.
  title: One Codex API (v1) Samples API
  version: v1
servers:
- url: https://app.onecodex.com
security:
- apiKeyAuth: []
tags:


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# Full source: https://raw.githubusercontent.com/api-evangelist/one-codex/refs/heads/main/openapi/one-codex-samples-api-openapi.yml