One Codex Annotation Sets API
The Annotation Sets API from One Codex — 4 operation(s) for annotation sets.
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OpenAPI Specification
openapi: 3.2.0
info:
description: The One Codex API (v1) -- programmatic access to One Codex's suite of microbial genomics data storage, analysis, and query tools.
title: One Codex API (v1) Account Annotation Sets API
version: v1
servers:
- url: https://app.onecodex.com
security:
- apiKeyAuth: []
tags:
- name: Annotation Sets
paths:
/api/v1/annotation_sets:
get:
operationId: get_annotation_sets_instances
parameters:
- description: Page number. Defaults to 1. See Pagination for more details.
in: query
name: page
required: false
schema:
default: 1
format: int32
type: integer
- description: Number of requested paginated records. Defaults to 50. See Pagination for more details.
in: query
name: per_page
required: false
schema:
default: 50
format: int32
type: integer
- description: 'Optional Mongo-style JSON sort clause, e.g., `sort={"created_at": true}` to sort by created_at (descending)'
in: query
name: sort
required: false
schema:
anyOf:
- type: string
- type: 'null'
default: null
- description: 'Optional Mongo-style JSON filter clause, e.g., `where={"$uri": {"$eq": "/api/v1/samples/0ee172af60e84f61"}}`'
in: query
name: where
required: false
schema:
anyOf:
- type: string
- type: 'null'
default: null
responses:
'200':
content:
application/json:
schema:
items:
properties:
$uri:
example: /api/v1/annotation_sets/0d77065796f8d173
pattern: ^/api/v1/annotation_sets/[a-f0-9]{16}$
readOnly: true
title: $Uri
type: string
assembly:
properties:
$ref:
example: /api/v1/assemblies/a1b2c3d4e5f67890
format: uri
pattern: ^/api/v1/assemblies/[a-f0-9]{16}$
type: string
title: assemblies
type: object
created_at:
description: Timestamp for when the object was created on the One Codex platform, encoded as a [RFC 3339](https://www.ietf.org/rfc/rfc3339.txt) timestamp.
format: date-time
title: Created At
type: string
job:
anyOf:
- properties:
$ref:
example: /api/v1/jobs/a1b2c3d4e5f67890
format: uri
pattern: ^/api/v1/jobs/[a-f0-9]{16}$
type: string
title: jobs
type: object
- type: 'null'
title: Job
required:
- $uri
- assembly
- created_at
- job
title: annotation_sets
type: object
type: array
description: OK
summary: GET annotation_sets instances
tags:
- Annotation Sets
/api/v1/annotation_sets/{id}:
get:
operationId: get_annotation_sets_self
parameters:
- in: path
name: id
required: true
schema:
type: string
responses:
'200':
content:
application/json:
schema:
properties:
$uri:
example: /api/v1/annotation_sets/0d77065796f8d173
pattern: ^/api/v1/annotation_sets/[a-f0-9]{16}$
readOnly: true
title: $Uri
type: string
assembly:
properties:
$ref:
example: /api/v1/assemblies/a1b2c3d4e5f67890
format: uri
pattern: ^/api/v1/assemblies/[a-f0-9]{16}$
type: string
title: assemblies
type: object
created_at:
description: Timestamp for when the object was created on the One Codex platform, encoded as a [RFC 3339](https://www.ietf.org/rfc/rfc3339.txt) timestamp.
format: date-time
title: Created At
type: string
job:
anyOf:
- properties:
$ref:
example: /api/v1/jobs/a1b2c3d4e5f67890
format: uri
pattern: ^/api/v1/jobs/[a-f0-9]{16}$
type: string
title: jobs
type: object
- type: 'null'
title: Job
required:
- $uri
- assembly
- created_at
- job
title: annotation_sets
type: object
description: OK
summary: GET annotation_sets
tags:
- Annotation Sets
/api/v1/annotation_sets/{id}/download_csv:
post:
operationId: post_annotation_sets_download_csv
parameters:
- in: path
name: id
required: true
schema:
type: string
responses:
'200':
content:
application/json:
schema:
properties:
download_uri:
title: Download Uri
type: string
required:
- download_uri
title: AnnotationSetDownloadCsvSchema
type: object
description: OK
summary: POST annotation_sets download_csv
tags:
- Annotation Sets
/api/v1/annotation_sets/{id}/download_uri:
post:
operationId: post_annotation_sets_download_uri
parameters:
- in: path
name: id
required: true
schema:
type: string
responses:
'200':
content:
application/json:
schema:
properties:
download_uri:
title: Download Uri
type: string
expires_in_hours:
title: Expires In Hours
type: integer
save_as_filename:
title: Save As Filename
type: string
required:
- download_uri
- expires_in_hours
- save_as_filename
title: AnnotationSetDownloadUriSchema
type: object
description: OK
summary: POST annotation_sets download_uri
tags:
- Annotation Sets
components:
securitySchemes:
apiKeyAuth:
in: header
name: X-API-Key
type: apiKey