Helena Bioinformatics Reprocess API

The reprocess API from Helena Bioinformatics — 2 operation(s) for reprocess.

Operations 2

GET /sessions/{session_id}/reprocess-eligibility Reprocess Eligibility #
POST /sessions/{session_id}/reprocess Reprocess session #

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OpenAPI Specification

helena-bio-reprocess-api-openapi.yml Raw ↑
openapi: 3.2.0
info:
  title: Helix Insight - Variant Analysis Service Reprocess API
  description: AI-powered variant analysis and interpretation service
  version: 0.1.0
tags:
- name: reprocess
paths:
  /sessions/{session_id}/reprocess-eligibility:
    get:
      tags:
      - reprocess
      summary: Reprocess Eligibility
      operationId: reprocess_eligibility_sessions__session_id__reprocess_eligibility_get
      security:
      - HTTPBearer: []
      parameters:
      - name: session_id
        in: path
        required: true
        schema:
          type: string
          format: uuid
          title: Session Id
      responses:
        '200':
          description: Successful Response
          content:
            application/json:
              schema: {}
        '422':
          description: Validation Error
          content:
            application/json:
              schema:
                $ref: '#/components/schemas/HTTPValidationError'
  /sessions/{session_id}/reprocess:
    post:
      tags:
      - reprocess
      summary: Reprocess session
      description: Re-annotate and re-classify an existing completed session (all phases)
      operationId: reprocess_session_sessions__session_id__reprocess_post
      security:
      - HTTPBearer: []
      parameters:
      - name: session_id
        in: path
        required: true
        schema:
          type: string
          format: uuid
          title: Session Id
      requestBody:
        content:
          application/json:
            schema:
              $ref: '#/components/schemas/ReprocessSessionRequest'
              default:
                reclassify: true
                regenerate_summaries: true
      responses:
        '202':
          description: Successful Response
          content:
            application/json:
              schema:
                $ref: '#/components/schemas/ReprocessSessionResponse'
        '422':
          description: Validation Error
          content:
            application/json:
              schema:
                $ref: '#/components/schemas/HTTPValidationError'
components:
  schemas:
    HTTPValidationError:
      properties:
        detail:
          items:
            $ref: '#/components/schemas/ValidationError'
          type: array
          title: Detail
      type: object
      title: HTTPValidationError
    ValidationError:
      properties:
        loc:
          items:
            anyOf:
            - type: string
            - type: integer
          type: array
          title: Location
        msg:
          type: string
          title: Message
        type:
          type: string
          title: Error Type
        input:
          title: Input
        ctx:
          type: object
          title: Context
      type: object
      required:
      - loc
      - msg
      - type
      title: ValidationError
    ReprocessSessionResponse:
      properties:
        task_id:
          type: string
          title: Task Id
        session_id:
          type: string
          format: uuid
          title: Session Id
        status:
          type: string
          title: Status
          default: queued
      type: object
      required:
      - task_id
      - session_id
      title: ReprocessSessionResponse
      description: Response for reprocess endpoint (202 Accepted).
    ReprocessSessionRequest:
      properties:
        reclassify:
          type: boolean
          title: Reclassify
          description: Re-run ACMG classification after annotation
          default: true
        regenerate_summaries:
          type: boolean
          title: Regenerate Summaries
          description: Re-export gene_summaries.ndjson.gz
          default: true
      type: object
      title: ReprocessSessionRequest
      description: Request body for POST /sessions/{session_id}/reprocess.
  securitySchemes:
    HTTPBearer:
      type: http
      scheme: bearer