Helena Bioinformatics

Helena Bioinformatics Public Atlas API

The public-atlas API from Helena Bioinformatics — 1 operation(s) for public-atlas.

GitHub OpenAPI

Operations 1

GET /public/v1/atlas/statistics Statistics #

Specifications

⚙
OpenAPI
https://artifacts.apis.io/helena-bio/openapi/helena-bio-public-atlas-api-openapi.yml

Schemas & Data

📊
JSONSchema
https://artifacts.apis.io/helena-bio/json-schema/helena-bio-mtdna-curation-fields-schema.json
📊
JSONSchema
https://artifacts.apis.io/helena-bio/json-schema/helena-bio-section-response-schema.json
📊
JSONSchema
https://artifacts.apis.io/helena-bio/json-schema/helena-bio-clin-var-lite-export-request-schema.json
📊
JSONSchema
https://artifacts.apis.io/helena-bio/json-schema/helena-bio-gene-literature-response-schema.json
📊
JSONSchema
https://artifacts.apis.io/helena-bio/json-schema/helena-bio-reclassification-run-detail-schema-schema.json
📊
JSONSchema
https://artifacts.apis.io/helena-bio/json-schema/helena-bio-vep-cache-stats-response-schema.json

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OpenAPI Specification

helena-bio-public-atlas-api-openapi.yml Raw ↑ 
openapi: 3.2.0
info:
  title: Helix Insight - Variant Analysis Service Public Atlas API
  description: AI-powered variant analysis and interpretation service
  version: 0.1.0
tags:
- name: public-atlas
paths:
  /public/v1/atlas/statistics:
    get:
      tags:
      - public-atlas
      summary: Statistics
      description: Return validated counts from the active published Atlas only.
      operationId: statistics_public_v1_atlas_statistics_get
      responses:
        '200':
          description: Successful Response
          content:
            application/json:
              schema:
                $ref: '#/components/schemas/PublicAtlasStatisticsReadyResponse'
        '503':
          description: Service Unavailable
          content:
            application/json:
              schema:
                $ref: '#/components/schemas/PublicAtlasStatisticsUnavailableResponse'
components:
  schemas:
    PublicAtlasStatisticsReadyResponse:
      properties:
        contract_version:
          type: string
          const: '1.0'
          title: Contract Version
          default: '1.0'
        status:
          type: string
          const: ready
          title: Status
          default: ready
        total:
          type: integer
          minimum: 0.0
          title: Total
        classes:
          $ref: '#/components/schemas/PublicAtlasClassCounts'
        observed_at:
          type: string
          format: date-time
          title: Observed At
      additionalProperties: false
      type: object
      required:
      - total
      - classes
      - observed_at
      title: PublicAtlasStatisticsReadyResponse
    PublicAtlasStatisticsUnavailableResponse:
      properties:
        contract_version:
          type: string
          const: '1.0'
          title: Contract Version
          default: '1.0'
        status:
          type: string
          const: unavailable
          title: Status
          default: unavailable
        message:
          type: string
          const: Live Atlas statistics are temporarily unavailable.
          title: Message
          default: Live Atlas statistics are temporarily unavailable.
        retryable:
          type: boolean
          const: true
          title: Retryable
          default: true
      additionalProperties: false
      type: object
      title: PublicAtlasStatisticsUnavailableResponse
    PublicAtlasClassCounts:
      properties:
        pathogenic:
          type: integer
          minimum: 0.0
          title: Pathogenic
        likely_pathogenic:
          type: integer
          minimum: 0.0
          title: Likely Pathogenic
        uncertain_significance:
          type: integer
          minimum: 0.0
          title: Uncertain Significance
        likely_benign:
          type: integer
          minimum: 0.0
          title: Likely Benign
        benign:
          type: integer
          minimum: 0.0
          title: Benign
      additionalProperties: false
      type: object
      required:
      - pathogenic
      - likely_pathogenic
      - uncertain_significance
      - likely_benign
      - benign
      title: PublicAtlasClassCounts
  securitySchemes:
    HTTPBearer:
      type: http
      scheme: bearer