Genialis Variant Annotations API
The Variant Annotations API from Genialis — 1 operation(s) for variant annotations.
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OpenAPI Specification
openapi: 3.2.0
info:
title: Genialis base Variant Annotations API
version: 0.0.0
description: Backend of the Genialis platform.
servers:
- url: https://app.genialis.com
description: Base URL declared by the provider in apis.yml (roadmap#122).
tags:
- name: Variant Annotations
paths:
/api/variant_annotations:
get:
operationId: api_variant_annotations_list
description: VariantAnnotation endpoint.
parameters:
- in: query
name: clinical_diagnosis
schema:
type: string
- in: query
name: clinical_diagnosis__contains
schema:
type: string
- in: query
name: clinical_diagnosis__icontains
schema:
type: string
- in: query
name: clinical_diagnosis__iexact
schema:
type: string
- in: query
name: clinical_diagnosis__in
schema:
type: array
items:
type: string
description: Multiple values may be separated by commas.
explode: false
style: form
- in: query
name: clinical_diagnosis__isnull
schema:
type: boolean
- in: query
name: clinical_diagnosis__istartswith
schema:
type: string
- in: query
name: clinical_diagnosis__startswith
schema:
type: string
- in: query
name: clinical_significance
schema:
type: string
- in: query
name: clinical_significance__contains
schema:
type: string
- in: query
name: clinical_significance__icontains
schema:
type: string
- in: query
name: clinical_significance__iexact
schema:
type: string
- in: query
name: clinical_significance__in
schema:
type: array
items:
type: string
description: Multiple values may be separated by commas.
explode: false
style: form
- in: query
name: clinical_significance__isnull
schema:
type: boolean
- in: query
name: clinical_significance__istartswith
schema:
type: string
- in: query
name: clinical_significance__startswith
schema:
type: string
- in: query
name: clinvar_id
schema:
type: string
- in: query
name: clinvar_id__contains
schema:
type: string
- in: query
name: clinvar_id__icontains
schema:
type: string
- in: query
name: clinvar_id__iexact
schema:
type: string
- in: query
name: clinvar_id__in
schema:
type: array
items:
type: string
description: Multiple values may be separated by commas.
explode: false
style: form
- in: query
name: clinvar_id__isnull
schema:
type: boolean
- in: query
name: clinvar_id__istartswith
schema:
type: string
- in: query
name: clinvar_id__startswith
schema:
type: string
- in: query
name: dbsnp_id
schema:
type: string
- in: query
name: dbsnp_id__contains
schema:
type: string
- in: query
name: dbsnp_id__icontains
schema:
type: string
- in: query
name: dbsnp_id__iexact
schema:
type: string
- in: query
name: dbsnp_id__in
schema:
type: array
items:
type: string
description: Multiple values may be separated by commas.
explode: false
style: form
- in: query
name: dbsnp_id__isnull
schema:
type: boolean
- in: query
name: dbsnp_id__istartswith
schema:
type: string
- in: query
name: dbsnp_id__startswith
schema:
type: string
- in: query
name: id
schema:
type: integer
- in: query
name: id__gt
schema:
type: integer
- in: query
name: id__gte
schema:
type: integer
- in: query
name: id__in
schema:
type: array
items:
type: integer
description: Multiple values may be separated by commas.
explode: false
style: form
- in: query
name: id__isnull
schema:
type: boolean
- in: query
name: id__lt
schema:
type: integer
- in: query
name: id__lte
schema:
type: integer
- name: limit
required: false
in: query
description: Number of results to return per page.
schema:
type: integer
- name: offset
required: false
in: query
description: The initial index from which to return the results.
schema:
type: integer
- name: ordering
required: false
in: query
description: Which field to use when ordering the results.
schema:
type: string
- in: query
name: transcripts__annotation
schema:
type: string
- in: query
name: transcripts__annotation__contains
schema:
type: string
- in: query
name: transcripts__annotation__icontains
schema:
type: string
- in: query
name: transcripts__annotation__iexact
schema:
type: string
- in: query
name: transcripts__annotation__in
schema:
type: array
items:
type: string
description: Multiple values may be separated by commas.
explode: false
style: form
- in: query
name: transcripts__annotation__isnull
schema:
type: boolean
- in: query
name: transcripts__annotation__istartswith
schema:
type: string
- in: query
name: transcripts__annotation__startswith
schema:
type: string
- in: query
name: transcripts__annotation_impact
schema:
type: string
- in: query
name: transcripts__annotation_impact__contains
schema:
type: string
- in: query
name: transcripts__annotation_impact__icontains
schema:
type: string
- in: query
name: transcripts__annotation_impact__iexact
schema:
type: string
- in: query
name: transcripts__annotation_impact__in
schema:
type: array
items:
type: string
description: Multiple values may be separated by commas.
explode: false
style: form
- in: query
name: transcripts__annotation_impact__isnull
schema:
type: boolean
- in: query
name: transcripts__annotation_impact__istartswith
schema:
type: string
- in: query
name: transcripts__annotation_impact__startswith
schema:
type: string
- in: query
name: transcripts__gene
schema:
type: string
- in: query
name: transcripts__gene__contains
schema:
type: string
- in: query
name: transcripts__gene__icontains
schema:
type: string
- in: query
name: transcripts__gene__iexact
schema:
type: string
- in: query
name: transcripts__gene__in
schema:
type: array
items:
type: string
description: Multiple values may be separated by commas.
explode: false
style: form
- in: query
name: transcripts__gene__isnull
schema:
type: boolean
- in: query
name: transcripts__gene__istartswith
schema:
type: string
- in: query
name: transcripts__gene__startswith
schema:
type: string
- in: query
name: transcripts__protein_impact
schema:
type: string
- in: query
name: transcripts__protein_impact__contains
schema:
type: string
- in: query
name: transcripts__protein_impact__icontains
schema:
type: string
- in: query
name: transcripts__protein_impact__iexact
schema:
type: string
- in: query
name: transcripts__protein_impact__in
schema:
type: array
items:
type: string
description: Multiple values may be separated by commas.
explode: false
style: form
- in: query
name: transcripts__protein_impact__isnull
schema:
type: boolean
- in: query
name: transcripts__protein_impact__istartswith
schema:
type: string
- in: query
name: transcripts__protein_impact__startswith
schema:
type: string
- in: query
name: type
schema:
type:
- string
- 'null'
enum:
- INDEL
- MIXED
- MNP
- SNP
- SYMBOLIC
description: '* `SNP` - SNP
* `INDEL` - INDEL
* `MIXED` - MIXED
* `MNP` - MNP
* `SYMBOLIC` - SYMBOLIC'
- in: query
name: type__contains
schema:
type: string
- in: query
name: type__icontains
schema:
type: string
- in: query
name: type__iexact
schema:
type: string
- in: query
name: type__in
schema:
type: array
items:
type: string
description: Multiple values may be separated by commas.
explode: false
style: form
- in: query
name: type__isnull
schema:
type: boolean
- in: query
name: type__istartswith
schema:
type: string
- in: query
name: type__startswith
schema:
type: string
- in: query
name: variant
schema:
type: integer
- in: query
name: variant__in
schema:
type: array
items:
type: integer
description: Multiple values may be separated by commas.
explode: false
style: form
- in: query
name: variant__isnull
schema:
type: boolean
tags:
- Variant Annotations
security:
- cookieAuth: []
- {}
responses:
'200':
content:
application/json:
schema:
$ref: '#/components/schemas/PaginatedVariantAnnotationList'
description: ''
summary: Api variant annotations list
x-summary-source: derived
components:
schemas:
VariantTranscript:
type: object
description: Serializer for VariantAnnotationTranscript objects.
properties:
id:
type: integer
readOnly: true
variant_annotation_id:
type: integer
readOnly: true
annotation:
type: string
annotation_impact:
type: string
maxLength: 20
gene:
type: string
maxLength: 100
protein_impact:
type: string
maxLength: 100
transcript_id:
type: string
maxLength: 200
canonical:
type: boolean
required:
- annotation
- annotation_impact
- gene
- id
- protein_impact
- transcript_id
- variant_annotation_id
VariantAnnotationTypeEnum:
enum:
- SNP
- INDEL
- MIXED
- MNP
- SYMBOLIC
type: string
description: '* `SNP` - SNP
* `INDEL` - INDEL
* `MIXED` - MIXED
* `MNP` - MNP
* `SYMBOLIC` - SYMBOLIC'
BlankEnum:
enum:
- ''
VariantAnnotation:
type: object
description: Serializer for VariantAnnotation objects.
properties:
id:
type: integer
readOnly: true
variant_id:
type: integer
readOnly: true
type:
oneOf:
- $ref: '#/components/schemas/VariantAnnotationTypeEnum'
- $ref: '#/components/schemas/BlankEnum'
- $ref: '#/components/schemas/NullEnum'
clinical_diagnosis:
type:
- string
- 'null'
clinical_significance:
type:
- string
- 'null'
maxLength: 100
dbsnp_id:
type:
- string
- 'null'
maxLength: 150
clinvar_id:
type:
- string
- 'null'
maxLength: 150
transcripts:
type: array
items:
$ref: '#/components/schemas/VariantTranscript'
required:
- id
- variant_id
NullEnum:
enum:
- null
PaginatedVariantAnnotationList:
type: object
required:
- count
- results
properties:
count:
type: integer
example: 123
next:
type:
- string
- 'null'
format: uri
example: http://api.example.org/accounts/?offset=400&limit=100
previous:
type:
- string
- 'null'
format: uri
example: http://api.example.org/accounts/?offset=200&limit=100
results:
type: array
items:
$ref: '#/components/schemas/VariantAnnotation'
securitySchemes:
cookieAuth:
type: apiKey
in: cookie
name: sessionid