Genialis Kb API
The Kb API from Genialis — 5 operation(s) for kb.
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OpenAPI Specification
openapi: 3.2.0
info:
title: Genialis base Kb API
version: 0.0.0
description: Backend of the Genialis platform.
servers:
- url: https://app.genialis.com
description: Base URL declared by the provider in apis.yml (roadmap#122).
tags:
- name: Kb
paths:
/api/kb/feature:
get:
operationId: api_kb_feature_list
description: 'Endpoint used for feature search.
Request:
- query
- source
- species
- type
- feature_id
Response:
- a list of matching features'
parameters:
- in: query
name: feature_id
schema:
type: array
items:
type: string
description: Multiple values may be separated by commas.
explode: false
style: form
- in: query
name: feature_id__in
schema:
type: array
items:
type: string
description: Multiple values may be separated by commas.
explode: false
style: form
- name: limit
required: false
in: query
description: Number of results to return per page.
schema:
type: integer
- name: offset
required: false
in: query
description: The initial index from which to return the results.
schema:
type: integer
- name: ordering
required: false
in: query
description: Which field to use when ordering the results.
schema:
type: string
- in: query
name: query
schema:
type: array
items:
type: string
description: Multiple values may be separated by commas.
explode: false
style: form
- in: query
name: source
schema:
type: array
items:
type: string
description: Multiple values may be separated by commas.
explode: false
style: form
- in: query
name: species
schema:
type: array
items:
type: string
description: Multiple values may be separated by commas.
explode: false
style: form
- in: query
name: type
schema:
type: string
enum:
- exon
- gene
- probe
- transcript
description: '* `gene` - Gene
* `transcript` - Transcript
* `exon` - Exon
* `probe` - Probe'
tags:
- Kb
security:
- cookieAuth: []
- {}
responses:
'200':
content:
application/json:
schema:
$ref: '#/components/schemas/PaginatedFeatureList'
description: ''
summary: Api kb feature list
x-summary-source: derived
post:
operationId: api_kb_feature_create
description: Endpoint handler.
tags:
- Kb
requestBody:
content:
application/json:
schema:
$ref: '#/components/schemas/Feature'
application/x-www-form-urlencoded:
schema:
$ref: '#/components/schemas/Feature'
multipart/form-data:
schema:
$ref: '#/components/schemas/Feature'
required: true
security:
- cookieAuth: []
- {}
responses:
'200':
content:
application/json:
schema:
$ref: '#/components/schemas/Feature'
description: ''
summary: Api kb feature create
x-summary-source: derived
/api/kb/feature/paste:
post:
operationId: api_kb_feature_paste_create
description: Endpoint used for exactly matching pasted genes.
tags:
- Kb
requestBody:
content:
application/json:
schema:
$ref: '#/components/schemas/Feature'
application/x-www-form-urlencoded:
schema:
$ref: '#/components/schemas/Feature'
multipart/form-data:
schema:
$ref: '#/components/schemas/Feature'
required: true
security:
- cookieAuth: []
- {}
responses:
'200':
content:
application/json:
schema:
$ref: '#/components/schemas/Feature'
description: ''
summary: Api kb feature paste create
x-summary-source: derived
/api/kb/feature/search:
get:
operationId: api_kb_feature_search_list
description: 'Endpoint used for feature search.
Request:
- query
- source
- species
- type
- feature_id
Response:
- a list of matching features'
parameters:
- in: query
name: feature_id
schema:
type: array
items:
type: string
description: Multiple values may be separated by commas.
explode: false
style: form
- in: query
name: feature_id__in
schema:
type: array
items:
type: string
description: Multiple values may be separated by commas.
explode: false
style: form
- name: limit
required: false
in: query
description: Number of results to return per page.
schema:
type: integer
- name: offset
required: false
in: query
description: The initial index from which to return the results.
schema:
type: integer
- name: ordering
required: false
in: query
description: Which field to use when ordering the results.
schema:
type: string
- in: query
name: query
schema:
type: array
items:
type: string
description: Multiple values may be separated by commas.
explode: false
style: form
- in: query
name: source
schema:
type: array
items:
type: string
description: Multiple values may be separated by commas.
explode: false
style: form
- in: query
name: species
schema:
type: array
items:
type: string
description: Multiple values may be separated by commas.
explode: false
style: form
- in: query
name: type
schema:
type: string
enum:
- exon
- gene
- probe
- transcript
description: '* `gene` - Gene
* `transcript` - Transcript
* `exon` - Exon
* `probe` - Probe'
tags:
- Kb
security:
- cookieAuth: []
- {}
responses:
'200':
content:
application/json:
schema:
$ref: '#/components/schemas/PaginatedFeatureList'
description: ''
summary: Api kb feature search list
x-summary-source: derived
post:
operationId: api_kb_feature_search_create
description: Endpoint handler.
tags:
- Kb
requestBody:
content:
application/json:
schema:
$ref: '#/components/schemas/Feature'
application/x-www-form-urlencoded:
schema:
$ref: '#/components/schemas/Feature'
multipart/form-data:
schema:
$ref: '#/components/schemas/Feature'
required: true
security:
- cookieAuth: []
- {}
responses:
'200':
content:
application/json:
schema:
$ref: '#/components/schemas/Feature'
description: ''
summary: Api kb feature search create
x-summary-source: derived
/api/kb/feature/search/paste:
post:
operationId: api_kb_feature_search_paste_create
description: Endpoint used for exactly matching pasted genes.
tags:
- Kb
requestBody:
content:
application/json:
schema:
$ref: '#/components/schemas/Feature'
application/x-www-form-urlencoded:
schema:
$ref: '#/components/schemas/Feature'
multipart/form-data:
schema:
$ref: '#/components/schemas/Feature'
required: true
security:
- cookieAuth: []
- {}
responses:
'200':
content:
application/json:
schema:
$ref: '#/components/schemas/Feature'
description: ''
summary: Api kb feature search paste create
x-summary-source: derived
/api/kb/mapping/search:
get:
operationId: api_kb_mapping_search_list
description: 'Endpoint used for mapping search.
Request:
- source_id
- source_db
- source_species
- target_id
- target_db
- target_species
- relation_type
Response:
- a list of matching mappings'
parameters:
- name: limit
required: false
in: query
description: Number of results to return per page.
schema:
type: integer
- name: offset
required: false
in: query
description: The initial index from which to return the results.
schema:
type: integer
- name: ordering
required: false
in: query
description: Which field to use when ordering the results.
schema:
type: string
- in: query
name: source_db
schema:
type: string
- in: query
name: source_db__contains
schema:
type: string
- in: query
name: source_db__icontains
schema:
type: string
- in: query
name: source_db__iexact
schema:
type: string
- in: query
name: source_db__in
schema:
type: array
items:
type: string
description: Multiple values may be separated by commas.
explode: false
style: form
- in: query
name: source_db__isnull
schema:
type: boolean
- in: query
name: source_db__istartswith
schema:
type: string
- in: query
name: source_db__startswith
schema:
type: string
- in: query
name: source_id
schema:
type: string
- in: query
name: source_id__contains
schema:
type: string
- in: query
name: source_id__icontains
schema:
type: string
- in: query
name: source_id__iexact
schema:
type: string
- in: query
name: source_id__in
schema:
type: array
items:
type: string
description: Multiple values may be separated by commas.
explode: false
style: form
- in: query
name: source_id__isnull
schema:
type: boolean
- in: query
name: source_id__istartswith
schema:
type: string
- in: query
name: source_id__startswith
schema:
type: string
- in: query
name: source_species
schema:
type: string
- in: query
name: source_species__contains
schema:
type: string
- in: query
name: source_species__icontains
schema:
type: string
- in: query
name: source_species__iexact
schema:
type: string
- in: query
name: source_species__in
schema:
type: array
items:
type: string
description: Multiple values may be separated by commas.
explode: false
style: form
- in: query
name: source_species__isnull
schema:
type: boolean
- in: query
name: source_species__istartswith
schema:
type: string
- in: query
name: source_species__startswith
schema:
type: string
- in: query
name: target_db
schema:
type: string
- in: query
name: target_db__contains
schema:
type: string
- in: query
name: target_db__icontains
schema:
type: string
- in: query
name: target_db__iexact
schema:
type: string
- in: query
name: target_db__in
schema:
type: array
items:
type: string
description: Multiple values may be separated by commas.
explode: false
style: form
- in: query
name: target_db__isnull
schema:
type: boolean
- in: query
name: target_db__istartswith
schema:
type: string
- in: query
name: target_db__startswith
schema:
type: string
- in: query
name: target_id
schema:
type: string
- in: query
name: target_id__contains
schema:
type: string
- in: query
name: target_id__icontains
schema:
type: string
- in: query
name: target_id__iexact
schema:
type: string
- in: query
name: target_id__in
schema:
type: array
items:
type: string
description: Multiple values may be separated by commas.
explode: false
style: form
- in: query
name: target_id__isnull
schema:
type: boolean
- in: query
name: target_id__istartswith
schema:
type: string
- in: query
name: target_id__startswith
schema:
type: string
- in: query
name: target_species
schema:
type: string
- in: query
name: target_species__contains
schema:
type: string
- in: query
name: target_species__icontains
schema:
type: string
- in: query
name: target_species__iexact
schema:
type: string
- in: query
name: target_species__in
schema:
type: array
items:
type: string
description: Multiple values may be separated by commas.
explode: false
style: form
- in: query
name: target_species__isnull
schema:
type: boolean
- in: query
name: target_species__istartswith
schema:
type: string
- in: query
name: target_species__startswith
schema:
type: string
tags:
- Kb
security:
- cookieAuth: []
- {}
responses:
'200':
content:
application/json:
schema:
$ref: '#/components/schemas/PaginatedMappingList'
description: ''
summary: Api kb mapping search list
x-summary-source: derived
post:
operationId: api_kb_mapping_search_create
description: Endpoint handler.
tags:
- Kb
requestBody:
content:
application/json:
schema:
$ref: '#/components/schemas/Mapping'
application/x-www-form-urlencoded:
schema:
$ref: '#/components/schemas/Mapping'
multipart/form-data:
schema:
$ref: '#/components/schemas/Mapping'
required: true
security:
- cookieAuth: []
- {}
responses:
'200':
content:
application/json:
schema:
$ref: '#/components/schemas/Mapping'
description: ''
summary: Api kb mapping search create
x-summary-source: derived
components:
schemas:
PaginatedFeatureList:
type: object
required:
- count
- results
properties:
count:
type: integer
example: 123
next:
type:
- string
- 'null'
format: uri
example: http://api.example.org/accounts/?offset=400&limit=100
previous:
type:
- string
- 'null'
format: uri
example: http://api.example.org/accounts/?offset=200&limit=100
results:
type: array
items:
$ref: '#/components/schemas/Feature'
SubTypeEnum:
enum:
- protein-coding
- pseudo
- rRNA
- ncRNA
- snRNA
- snoRNA
- tRNA
- asRNA
- other
- unknown
type: string
description: '* `protein-coding` - Protein-coding
* `pseudo` - Pseudo
* `rRNA` - rRNA
* `ncRNA` - ncRNA
* `snRNA` - snRNA
* `snoRNA` - snoRNA
* `tRNA` - tRNA
* `asRNA` - asRNA
* `other` - Other
* `unknown` - Unknown'
RelationTypeEnum:
enum:
- crossdb
- ortholog
- transcript
- exon
type: string
description: '* `crossdb` - Crossdb
* `ortholog` - Ortholog
* `transcript` - Transcript
* `exon` - Exon'
FeatureTypeEnum:
enum:
- gene
- transcript
- exon
- probe
type: string
description: '* `gene` - Gene
* `transcript` - Transcript
* `exon` - Exon
* `probe` - Probe'
Mapping:
type: object
description: Serializer for mapping.
properties:
id:
type: integer
readOnly: true
relation_type:
$ref: '#/components/schemas/RelationTypeEnum'
source_db:
type: string
maxLength: 20
source_id:
type: string
maxLength: 50
source_species:
type: string
maxLength: 50
target_db:
type: string
maxLength: 20
target_id:
type: string
maxLength: 50
target_species:
type: string
maxLength: 50
required:
- id
- relation_type
- source_db
- source_id
- source_species
- target_db
- target_id
- target_species
Feature:
type: object
description: Serializer for feature.
properties:
aliases:
type: array
items:
type: string
maxLength: 256
description:
type: string
feature_id:
type: string
maxLength: 50
full_name:
type: string
maxLength: 350
id:
type: integer
readOnly: true
name:
type: string
maxLength: 1024
source:
type: string
maxLength: 20
species:
type: string
maxLength: 50
sub_type:
$ref: '#/components/schemas/SubTypeEnum'
type:
$ref: '#/components/schemas/FeatureTypeEnum'
required:
- feature_id
- id
- name
- source
- species
- sub_type
- type
PaginatedMappingList:
type: object
required:
- count
- results
properties:
count:
type: integer
example: 123
next:
type:
- string
- 'null'
format: uri
example: http://api.example.org/accounts/?offset=400&limit=100
previous:
type:
- string
- 'null'
format: uri
example: http://api.example.org/accounts/?offset=200&limit=100
results:
type: array
items:
$ref: '#/components/schemas/Mapping'
securitySchemes:
cookieAuth:
type: apiKey
in: cookie
name: sessionid