Emory University

Emory University Slicer Cli Web API

slicer_cli_web resource

GitHub OpenAPI

Operations 48

GET /slicer_cli_web/cli List CLIs #
POST /slicer_cli_web/cli/5f3d811c50cd9fe632566ecf/rerun Rerun Color Deconvolution #
POST /slicer_cli_web/cli/5f3d811c50cd9fe632566ecf/run Color Deconvolution #
POST /slicer_cli_web/cli/5f3d811c50cd9fe632566ed1/rerun Rerun Adaptive Color Deconvolution #
POST /slicer_cli_web/cli/5f3d811c50cd9fe632566ed1/run Adaptive Color Deconvolution #
POST /slicer_cli_web/cli/5f3d811c50cd9fe632566ed3/rerun Rerun Detects Nuclei #
POST /slicer_cli_web/cli/5f3d811c50cd9fe632566ed3/run Detects Nuclei #
POST /slicer_cli_web/cli/5f3d811c50cd9fe632566ed5/rerun Rerun Computes Nuclei Features #
POST /slicer_cli_web/cli/5f3d811c50cd9fe632566ed5/run Computes Nuclei Features #
POST /slicer_cli_web/cli/5f3d811c50cd9fe632566ed7/rerun Rerun Classify Nuclei #
POST /slicer_cli_web/cli/5f3d811c50cd9fe632566ed7/run Classify Nuclei #
POST /slicer_cli_web/cli/5f3d811c50cd9fe632566ed9/rerun Rerun Compute Background Intensity #
POST /slicer_cli_web/cli/5f3d811c50cd9fe632566ed9/run Compute Background Intensity #
POST /slicer_cli_web/cli/5f3d811c50cd9fe632566edb/rerun Rerun Separate Stains (PCA-based Macenko method) #
POST /slicer_cli_web/cli/5f3d811c50cd9fe632566edb/run Separate Stains (PCA-based Macenko method) #
POST /slicer_cli_web/cli/5f3d811c50cd9fe632566edd/rerun Rerun Positive Pixel Count #
POST /slicer_cli_web/cli/5f3d811c50cd9fe632566edd/run Positive Pixel Count #
POST /slicer_cli_web/cli/6226c700ea96453654b57afd/rerun Rerun Superpixel Pixelmap #
POST /slicer_cli_web/cli/6226c700ea96453654b57afd/run Superpixel Pixelmap #
POST /slicer_cli_web/cli/63a0a1fd9a9ebb3f668acd34/rerun Rerun Simple Get Region #
POST /slicer_cli_web/cli/63a0a1fd9a9ebb3f668acd34/run Simple Get Region #
DELETE /slicer_cli_web/cli/{id} Get a specific CLI #
GET /slicer_cli_web/cli/{id} Get a specific CLI #
GET /slicer_cli_web/cli/{id}/xml Get a specific CLI #
DELETE /slicer_cli_web/docker_image Remove a docker image #
GET /slicer_cli_web/docker_image List docker images and their CLIs #
PUT /slicer_cli_web/docker_image Add one or a list of images #
POST /slicer_cli_web/dsarchive_histomicstk_latest/BackgroundIntensity/rerun Rerun Compute Background Intensity #
POST /slicer_cli_web/dsarchive_histomicstk_latest/BackgroundIntensity/run Compute Background Intensity #
POST /slicer_cli_web/dsarchive_histomicstk_latest/ColorDeconvolution/rerun Rerun Color Deconvolution #
POST /slicer_cli_web/dsarchive_histomicstk_latest/ColorDeconvolution/run Color Deconvolution #
POST /slicer_cli_web/dsarchive_histomicstk_latest/ComputeNucleiFeatures/rerun Rerun Computes Nuclei Features #
POST /slicer_cli_web/dsarchive_histomicstk_latest/ComputeNucleiFeatures/run Computes Nuclei Features #
POST /slicer_cli_web/dsarchive_histomicstk_latest/NucleiClassification/rerun Rerun Classify Nuclei #
POST /slicer_cli_web/dsarchive_histomicstk_latest/NucleiClassification/run Classify Nuclei #
POST /slicer_cli_web/dsarchive_histomicstk_latest/NucleiDetection/rerun Rerun Detects Nuclei #
POST /slicer_cli_web/dsarchive_histomicstk_latest/NucleiDetection/run Detects Nuclei #
POST /slicer_cli_web/dsarchive_histomicstk_latest/PositivePixelCount/rerun Rerun Positive Pixel Count #
POST /slicer_cli_web/dsarchive_histomicstk_latest/PositivePixelCount/run Positive Pixel Count #
POST /slicer_cli_web/dsarchive_histomicstk_latest/SeparateStainsMacenkoPCA/rerun Rerun Separate Stains (PCA-based Macenko method) #
POST /slicer_cli_web/dsarchive_histomicstk_latest/SeparateStainsMacenkoPCA/run Separate Stains (PCA-based Macenko method) #
POST /slicer_cli_web/dsarchive_histomicstk_latest/SeparateStainsXuSnmf/rerun Rerun Adaptive Color Deconvolution #
POST /slicer_cli_web/dsarchive_histomicstk_latest/SeparateStainsXuSnmf/run Adaptive Color Deconvolution #
POST /slicer_cli_web/dsarchive_histomicstk_latest/SuperpixelSegmentation/rerun Rerun Superpixel Pixelmap #
POST /slicer_cli_web/dsarchive_histomicstk_latest/SuperpixelSegmentation/run Superpixel Pixelmap #
POST /slicer_cli_web/jvizcar_braak-study_cli-tasks/hp_tau_detection/rerun Rerun Simple Get Region #
POST /slicer_cli_web/jvizcar_braak-study_cli-tasks/hp_tau_detection/run Simple Get Region #
GET /slicer_cli_web/path_match Get the most recently updated resource that has a name and path that matches a… #

Specifications

⚙
OpenAPI
https://raw.githubusercontent.com/api-evangelist/emory/refs/heads/main/openapi/emory-slicer-cli-web-api-openapi.yml

Schemas & Data

📊
JSONSchema
https://raw.githubusercontent.com/api-evangelist/emory/refs/heads/main/json-schema/emory-item-schema.json
📊
JSONStructure
https://raw.githubusercontent.com/api-evangelist/emory/refs/heads/main/json-structure/emory-item-structure.json

Other Resources

🔗
x-examples
https://raw.githubusercontent.com/api-evangelist/emory/refs/heads/main/examples/emory-get-item-example.json
🔗
x-rules
https://raw.githubusercontent.com/api-evangelist/emory/refs/heads/main/rules/emory-rules.yml
🔗
x-vocabulary
https://raw.githubusercontent.com/api-evangelist/emory/refs/heads/main/vocabulary/emory-vocabulary.yml
🔗
x-json-ld
https://raw.githubusercontent.com/api-evangelist/emory/refs/heads/main/json-ld/emory-context.jsonld

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OpenAPI Specification

emory-slicer-cli-web-api-openapi.yml Raw ↑ 
openapi: 3.2.0
info:
  title: Girder REST API (Emory Digital Slide Archive) Slicer Cli…
  version: 3.2.14
  description: OpenAPI 3.0 conversion of the Girder REST API powering the Emory Digital Slide Archive (computablebrain). Converted faithfully from the live Swagger 2.0 document at https://computablebrain.emory.edu/api/v1/describe.
  license:
    name: Apache-2.0
    url: https://www.apache.org/licenses/LICENSE-2.0.txt
servers:
- url: https://computablebrain.emory.edu/api/v1
tags:


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# Full source: https://raw.githubusercontent.com/api-evangelist/emory/refs/heads/main/openapi/emory-slicer-cli-web-api-openapi.yml