Emory University histomicsui API

histomicsui resource

Documentation GitHub OpenAPI

Operations 5

GET /histomicsui/child_metadata/{id} Get all metadata for a resource and all folders and items that are children of a resource. #

PUT /histomicsui/quarantine/{id} Move an item to the quarantine folder. #

PUT /histomicsui/quarantine/{id}/restore Restore a quarantined item to its original folder. #

GET /histomicsui/query_metadata Get a list of items with a specific metadata value. #

GET /histomicsui/settings Get public settings for HistomicsUI. #

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OpenAPI Specification

openapi: 3.2.0
info:
  title: Girder REST API (Emory Digital Slide Archive) Histomicsui API
  version: 3.2.14
  description: OpenAPI 3.0 conversion of the Girder REST API powering the Emory Digital Slide Archive (computablebrain). Converted faithfully from the live Swagger 2.0 document at https://computablebrain.emory.edu/api/v1/describe.
  license:
    name: Apache-2.0
    url: https://www.apache.org/licenses/LICENSE-2.0.txt
servers:
- url: https://computablebrain.emory.edu/api/v1
tags:
- description: histomicsui resource
  name: histomicsui
paths:
  /histomicsui/child_metadata/{id}:
    get:
      operationId: histomicsui_getChildMetadata_child_metadata_id
      parameters:
      - name: id
        in: path
        required: true
        description: The ID of the resource.
        schema:
          type: string
      - name: type
        in: query
        required: true
        description: The type of the resource
        schema:
          type: string
          enum:
          - folder
          - collection
          - user
      responses:
        '200':
          description: Success
        '400':
          description: ID was invalid.
        '403':
          description: Access was denied for the resource.
      summary: Get all metadata for a resource and all folders and items that are children of a resource.
      tags:
      - histomicsui
  /histomicsui/quarantine/{id}:
    put:
      operationId: histomicsui_putQuarantine_put_quarantine_id
      parameters:
      - name: id
        in: path
        required: true
        description: The ID of the document.
        schema:
          type: string
      responses:
        '200':
          description: Success
          content:
            application/json:
              schema:
                $ref: '#/components/schemas/Item'
        '400':
          description: ID was invalid.
        '403':
          description: Write access was denied for the item
      summary: Move an item to the quarantine folder.
      tags:
      - histomicsui
  /histomicsui/quarantine/{id}/restore:
    put:
      operationId: histomicsui_restoreQuarantine_put_quarantine_id_restore
      parameters:
      - name: id
        in: path
        required: true
        description: The ID of the document.
        schema:
          type: string
      responses:
        '200':
          description: Success
          content:
            application/json:
              schema:
                $ref: '#/components/schemas/Item'
        '400':
          description: ID was invalid.
        '403':
          description: Write access was denied for the item
      summary: Restore a quarantined item to its original folder.
      tags:
      - histomicsui
  /histomicsui/query_metadata:
    get:
      operationId: histomicsui_findItemsByMetadata_query_metadata
      parameters:
      - name: key
        in: query
        required: true
        description: The metadata key
        schema:
          type: string
      - name: value
        in: query
        required: true
        description: The (json encoded) metadata value
        schema:
          type: string
      - name: limit
        in: query
        required: false
        description: Result set size limit.
        schema:
          type: integer
          format: int32
          default: 50
      - name: offset
        in: query
        required: false
        description: Offset into result set.
        schema:
          type: integer
          format: int32
          default: 0
      - name: sort
        in: query
        required: false
        description: Field to sort the result set by.
        schema:
          type: string
          default: name
      - name: sortdir
        in: query
        required: false
        description: 'Sort order: 1 for ascending, -1 for descending.'
        schema:
          type: integer
          format: int32
          enum:
          - 1
          - -1
          default: 1
      responses:
        '200':
          description: Success
        '400':
          description: 'Required parameters were not provided.


            Invalid value provided.'
      summary: Get a list of items with a specific metadata value.
      tags:
      - histomicsui
  /histomicsui/settings:
    get:
      operationId: histomicsui_getPublicSettings_settings
      responses:
        '200':
          description: Success
        '400':
          description: A parameter was invalid.
      summary: Get public settings for HistomicsUI.
      tags:
      - histomicsui
      parameters: []
components:
  schemas:
    Item:
      type: object
  securitySchemes:
    Girder-Token:
      in: header
      name: Girder-Token
      type: apiKey