Collaborative Drug Discovery Dose Response Calculations API
Protocol dose response calculations management
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OpenAPI Specification
openapi: 3.2.0
info:
contact:
url: https://support.collaborativedrug.com/hc/en-us/requests/new
description: 'Collaborative Drug Discovery provides an API (Application Programming
Interface) that can be used for secure programmatic access to your vault
data.'
license:
name: Proprietary
url: https://support.collaborativedrug.com/hc/en-us/requests/new
title: CDD Dose Response Calculations API
version: 1.0.0
servers:
- url: https://app.collaborativedrug.com/api/v1
security:
- ApiKeyAuth: []
tags:
- description: Protocol dose response calculations management
name: Dose Response Calculations
paths:
/vaults/{vault_id}/protocols/{protocol_id}/dose_response_calculations:
get:
description: Get all dose response calculations for a protocol.
operationId: getDoseResponseCalculations
parameters:
- in: path
name: vault_id
required: true
schema:
$ref: '#/components/schemas/vault_id'
- in: path
name: protocol_id
required: true
schema:
$ref: '#/components/schemas/protocol_id'
responses:
'200':
content:
application/json:
schema:
$ref: '#/components/schemas/calculations_list'
description: Success
'401':
content:
application/json:
schema:
$ref: '#/components/schemas/error_apikey'
description: Missing or invalid API key
'404':
content:
application/json:
schema:
$ref: '#/components/schemas/error'
description: Protocol not found
summary: List dose response calculations for a protocol
tags:
- Dose Response Calculations
/vaults/{vault_id}/protocols/{protocol_id}/dose_response_calculations/{dose_response_calculation_id}:
get:
description: Get the details of a single dose response calculation
operationId: getDoseResponseCalculation
parameters:
- in: path
name: vault_id
required: true
schema:
$ref: '#/components/schemas/vault_id'
- in: path
name: protocol_id
required: true
schema:
$ref: '#/components/schemas/protocol_id'
- in: path
name: dose_response_calculation_id
required: true
schema:
$ref: '#/components/schemas/dose_response_calculation_id'
responses:
'200':
content:
application/json:
schema:
$ref: '#/components/schemas/calculation'
description: Success
'401':
content:
application/json:
schema:
$ref: '#/components/schemas/error_apikey'
description: Missing or invalid API key
'404':
content:
application/json:
schema:
$ref: '#/components/schemas/error'
description: Protocol or dose response calculation not found
summary: Get a single dose response calculation
tags:
- Dose Response Calculations
put:
description: 'Update a dose response calculation''s fit parameters and/or minimum activity bounds.
To set a fixed constraint, use modifier "=" with a value.
To set a range constraint, use modifier "from" with a range object containing min and max.
To set a comparison constraint, use modifier ">", ">=", "<", or "<=" with a value.
To clear all fit parameter constraints, pass an empty fit_parameters object.'
operationId: updateDoseResponseCalculation
parameters:
- in: path
name: vault_id
required: true
schema:
$ref: '#/components/schemas/vault_id'
- in: path
name: protocol_id
required: true
schema:
$ref: '#/components/schemas/protocol_id'
- in: path
name: dose_response_calculation_id
required: true
schema:
$ref: '#/components/schemas/dose_response_calculation_id'
requestBody:
content:
application/json:
schema:
$ref: '#/components/schemas/calculation_update'
responses:
'200':
content:
application/json:
schema:
$ref: '#/components/schemas/calculation'
description: Success
'401':
content:
application/json:
schema:
$ref: '#/components/schemas/error_apikey'
description: Missing or invalid API key or insufficient permissions
'404':
content:
application/json:
schema:
$ref: '#/components/schemas/error'
description: Protocol or dose response calculation not found
'422':
content:
application/json:
schema:
$ref: '#/components/schemas/error'
description: 'Validation error. Possible causes include: unknown fit parameter, invalid modifier, range where lower > upper, non-numeric value, or unrecognized parameters.
'
summary: Update a dose response calculation
tags:
- Dose Response Calculations
components:
schemas:
calculation_update:
description: Request body for updating a dose response calculation
type: object
properties:
fit_parameters:
description: 'Fit parameter constraints for the calculation. Setting this to an empty object
clears all constraints. The available parameters depend on the calculation''s
equation_type:
- Hill: min, max, slope
- Biphasic: center1, center2, frac, plateau1, plateau2, slope1, slope2
- Bell Curve: plateau1, center1, slope1, peak, center2, slope2, plateau2
- Linear: slope, y_intercept
- Exponential Decay: c_0, c_min, k
- Michaelis-Menten: b_max, k_d
'
type: object
additionalProperties:
$ref: '#/components/schemas/fit_parameter_constraint'
minimum_activity:
description: Minimum activity (inactivity) bounds
type: object
properties:
lower:
description: The lower bound for the inactive range
type:
- 'null'
- number
example: 10
upper:
description: The upper bound for the inactive range
type:
- 'null'
- number
example: 90
modifier:
description: 'The modifier type. If not specified, it is inferred from the bounds (">", "<", or "from" for range).
'
type: string
example: from
fit_parameters:
description: 'Fit parameter constraints for curve fitting calculations. The available
parameters depend on the calculation''s equation_type:
- Hill: min, max, slope
- Biphasic: center1, center2, frac, plateau1, plateau2, slope1, slope2
- Bell Curve: plateau1, center1, slope1, peak, center2, slope2, plateau2
- Linear: slope, y_intercept
- Exponential Decay: c_0, c_min, k
- Michaelis-Menten: b_max, k_d
'
type: object
additionalProperties:
$ref: '#/components/schemas/fit_parameter_constraint'
example:
min:
modifier: '='
value: 0
max:
modifier: '>='
value: 100
calculations_list:
description: A list of calculations for a protocol
type: object
properties:
objects:
description: The list of calculations
type: array
items:
$ref: '#/components/schemas/calculation'
count:
description: The total number of calculations
type: integer
example: 5
error:
description: A general error response containing an error message and HTTP status code
properties:
code:
description: HTTP status code
type: integer
example: 404
error:
description: Human-readable error message
type: string
example: Resource not found
type: object
minimum_activity:
description: Minimum activity (inactivity) bounds for dose response calculations
type: object
properties:
lower:
description: The lower bound for the inactive range
type:
- 'null'
- number
example: 10
upper:
description: The upper bound for the inactive range
type:
- 'null'
- number
example: 90
calculation:
description: A protocol calculation
type: object
properties:
id:
description: The unique identifier of the calculation
type: integer
example: 12345
class:
description: 'The type of calculation. Values include "dose response calculation", "custom calculation", "normalized calculation", etc.
'
type: string
example: dose response calculation
inputs:
description: The input readout definitions used by this calculation
type: object
outputs:
description: The output readout definitions produced by this calculation
type: object
fit_parameters:
$ref: '#/components/schemas/fit_parameters'
description: Fit parameter constraints (only for dose response calculations)
minimum_activity:
$ref: '#/components/schemas/minimum_activity'
description: Minimum activity bounds (only for dose response calculations)
error_apikey:
description: Whenever the given API key doesn't allow access to the given vault or the vault doesn't exist
properties:
code:
default: 401
type: integer
error:
default: key not authorized for access to this vault
type: string
type: object
dose_response_calculation_id:
description: Numeric identifier of the dose response calculation
type: integer
fit_parameter_constraint:
description: A constraint for a fit parameter
type: object
properties:
modifier:
description: 'The type of constraint. Valid values are: "=" (fixed), ">", ">=", "<", "<=", "from" (range), "best fit" (unconstrained, data series only).
'
type:
- 'null'
- string
example: '='
value:
description: The constraint value. Required when modifier is "=", ">", ">=", "<", or "<=".
type:
- 'null'
- number
example: 0.5
range:
description: 'Range constraint with min and max values. Used when modifier is "from".
'
type: object
properties:
min:
description: The minimum value of the range
type: number
example: 0
max:
description: The maximum value of the range
type: number
example: 100
vault_id:
description: Numeric identifier of the vault
type: integer
protocol_id:
description: Numeric identifier of the protocol
type: integer
securitySchemes:
ApiKeyAuth:
in: header
name: X-CDD-Token
type: apiKey