Helena Bioinformatics · Agentic Access

Helena Bioinformatics Agentic Access

x-agentic-access generated

Helena Bioinformatics exposes 98 API operations that an AI agent could call, of which 42 are state-changing ‘acting’ operations. This is a recommended x-agentic-access execution contract — the scope, audience, consequence tier, short-lived token constraints, and escalation each action should carry before it is handed to an autonomous agent.

By consequence: 56 read, 38 write, and 4 safety-critical.

4 operations are classed safety-critical and should require human-in-the-loop approval at runtime.

Contracts are classified heuristically from the provider’s OpenAPI and refresh on every APIs.io network build; audience is bound per deployment. The model follows Curity’s Access Intelligence (apidays Munich 2026). Browse every provider’s agent contracts at agentic-access.apis.io.

BioinformaticsGenomicsClinicalHealthcareDataScience
Operations: 98 Acting: 42 Human-in-the-loop: 4 Method: generated

By consequence

read 56 write 38 safety-critical 4

Highest-consequence actions

The physical and safety-critical operations an agent could invoke — the ones that most warrant scoped tokens, tight TTLs, and escalation. Full per-operation contracts are in the source below.

MethodPathConsequenceHuman-in-loop
PUT /api/v1/platform/settings/{key} safety-critical required
DELETE /api/v1/platform/settings/{key} safety-critical required
POST /sessions/{session_id}/overrides safety-critical required
DELETE /sessions/{session_id}/overrides/{variant_idx} safety-critical required

Source

Agentic Access

Raw ↑ 
generated: '2026-10-29'
method: generated
source: openapi/helena-bio-openapi.json
description: Recommended x-agentic-access execution contracts, classified heuristically from
  the OpenAPI. A governance starting point for exposing this API to AI agents — review and bind
  audience per deployment. See research/curity/agentic-governance/.
summary:
  operations: 98
  by_action_class:
    connected: 56
    acting: 42
  by_consequence:
    read: 56
    write: 38
    safety-critical: 4
  human_in_the_loop_required: 4
operations:
- path: /health
  method: get
  operationId: health_check_health_get
  x-agentic-access:
    action-class: connected
    consequence: read
    subject: optional
    token:
      max-ttl: 3600
    audit: none
- path: /health/ready
  method: get
  operationId: readiness_check_health_ready_get
  x-agentic-access:
    action-class: connected
    consequence: read
    subject: optional
    token:
      max-ttl: 3600
    audit: none
- path: /public/v1/variants/interpret
  method: post
  operationId: interpret_public_variant_public_v1_variants_interpret_post
  x-agentic-access:
    action-class: acting
    consequence: write
    subject: required
    audience: null
    token:
      max-ttl: 900
    escalation:
      human-in-the-loop: conditional
      triggers:
      - abnormal
      - high-value
    audit: required
- path: /public/v1/variants/search
  method: post
  operationId: search_public_variant_public_v1_variants_search_post
  x-agentic-access:
    action-class: connected
    consequence: read
    subject: optional
    token:
      max-ttl: 3600
    audit: none
- path: /public/v1/variants/reference
  method: get
  operationId: public_reference_public_v1_variants_reference_get
  x-agentic-access:
    action-class: connected
    consequence: read
    subject: optional
    token:
      max-ttl: 3600
    audit: none
- path: /public/v1/gene-disease/ready
  method: get
  operationId: ready_public_v1_gene_disease_ready_get
  x-agentic-access:
    action-class: connected
    consequence: read
    subject: optional
    token:
      max-ttl: 3600
    audit: none
- path: /public/v1/gene-disease/genes/search
  method: post
  operationId: gene_associations_public_v1_gene_disease_genes_search_post
  x-agentic-access:
    action-class: acting
    consequence: write
    subject: required
    audience: null
    token:
      max-ttl: 900
    escalation:
      human-in-the-loop: conditional
      triggers:
      - abnormal
      - high-value
    audit: required
- path: /public/v1/gene-disease/diseases/search
  method: post
  operationId: disease_genes_public_v1_gene_disease_diseases_search_post
  x-agentic-access:
    action-class: acting
    consequence: write
    subject: required
    audience: null
    token:
      max-ttl: 900
    escalation:
      human-in-the-loop: conditional
      triggers:
      - abnormal
      - high-value
    audit: required
- path: /public/v1/genes/resolve
  method: post
  operationId: resolve_gene_public_v1_genes_resolve_post
  x-agentic-access:
    action-class: acting
    consequence: write
    subject: required
    audience: null
    token:
      max-ttl: 900
    escalation:
      human-in-the-loop: conditional
      triggers:
      - abnormal
      - high-value
    audit: required
- path: /public/v1/genes/profile
  method: post
  operationId: gene_profile_public_v1_genes_profile_post
  x-agentic-access:
    action-class: acting
    consequence: write
    subject: required
    audience: null
    token:
      max-ttl: 900
    escalation:
      human-in-the-loop: conditional
      triggers:
      - abnormal
      - high-value
    audit: required
- path: /public/v1/genes/section
  method: post
  operationId: gene_section_public_v1_genes_section_post
  x-agentic-access:
    action-class: acting
    consequence: write
    subject: required
    audience: null
    token:
      max-ttl: 900
    escalation:
      human-in-the-loop: conditional
      triggers:
      - abnormal
      - high-value
    audit: required
- path: /public/v1/genes/catalog
  method: post
  operationId: gene_catalog_public_v1_genes_catalog_post
  x-agentic-access:
    action-class: acting
    consequence: write
    subject: required
    audience: null
    token:
      max-ttl: 900
    escalation:
      human-in-the-loop: conditional
      triggers:
      - abnormal
      - high-value
    audit: required
- path: /public/v1/genes/literature
  method: post
  operationId: gene_literature_public_v1_genes_literature_post
  x-agentic-access:
    action-class: acting
    consequence: write
    subject: required
    audience: null
    token:
      max-ttl: 900
    escalation:
      human-in-the-loop: conditional
      triggers:
      - abnormal
      - high-value
    audit: required
- path: /public/v1/atlas/statistics
  method: get
  operationId: statistics_public_v1_atlas_statistics_get
  x-agentic-access:
    action-class: connected
    consequence: read
    subject: optional
    token:
      max-ttl: 3600
    audit: none
- path: /sessions/{session_id}/variants/summaries
  method: get
  operationId: stream_gene_summaries_sessions__session_id__variants_summaries_get
  x-agentic-access:
    action-class: connected
    consequence: read
    subject: optional
    token:
      max-ttl: 3600
    audit: none
- path: /sessions/{session_id}/variants/by-gene/{gene_symbol}
  method: get
  operationId: get_gene_variants_sessions__session_id__variants_by_gene__gene_symbol__get
  x-agentic-access:
    action-class: connected
    consequence: read
    subject: optional
    token:
      max-ttl: 3600
    audit: none
- path: /sessions/{session_id}/variants/stream/by-gene
  method: get
  operationId: stream_variants_by_gene_sessions__session_id__variants_stream_by_gene_get
  x-agentic-access:
    action-class: connected
    consequence: read
    subject: optional
    token:
      max-ttl: 3600
    audit: none
- path: /sessions/{session_id}/variants/browse/version
  method: get
  operationId: result_version_sessions__session_id__variants_browse_version_get
  x-agentic-access:
    action-class: connected
    consequence: read
    subject: optional
    token:
      max-ttl: 3600
    audit: none
- path: /sessions/{session_id}/variants/browse
  method: get
  operationId: result_page_sessions__session_id__variants_browse_get
  x-agentic-access:
    action-class: connected
    consequence: read
    subject: optional
    token:
      max-ttl: 3600
    audit: none
- path: /sessions/{session_id}/variants/browse/detail/{variant_idx}
  method: get
  operationId: result_detail_sessions__session_id__variants_browse_detail__variant_idx__get
  x-agentic-access:
    action-class: connected
    consequence: read
    subject: optional
    token:
      max-ttl: 3600
    audit: none
- path: /sessions/{session_id}/variants
  method: get
  operationId: query_variants_sessions__session_id__variants_get
  x-agentic-access:
    action-class: connected
    consequence: read
    subject: optional
    token:
      max-ttl: 3600
    audit: none
- path: /sessions/{session_id}/variants/by-gene
  method: get
  operationId: get_variants_by_gene_sessions__session_id__variants_by_gene_get
  x-agentic-access:
    action-class: connected
    consequence: read
    subject: optional
    token:
      max-ttl: 3600
    audit: none
- path: /sessions/{session_id}/variants/sv-presence
  method: get
  operationId: get_sv_presence_sessions__session_id__variants_sv_presence_get
  x-agentic-access:
    action-class: connected
    consequence: read
    subject: optional
    token:
      max-ttl: 3600
    audit: none
- path: /sessions/{session_id}/variants/{variant_idx}
  method: get
  operationId: get_variant_detail_sessions__session_id__variants__variant_idx__get
  x-agentic-access:
    action-class: connected
    consequence: read
    subject: optional
    token:
      max-ttl: 3600
    audit: none
- path: /sessions/{session_id}/variants/statistics/summary
  method: get
  operationId: get_variant_statistics_sessions__session_id__variants_statistics_summary_get
  x-agentic-access:
    action-class: connected
    consequence: read
    subject: optional
    token:
      max-ttl: 3600
    audit: none
- path: /sessions/{session_id}/variants/{variant_idx}/transcripts
  method: get
  operationId: get_transcript_annotations_sessions__session_id__variants__variant_idx__transcripts_get
  x-agentic-access:
    action-class: connected
    consequence: read
    subject: optional
    token:
      max-ttl: 3600
    audit: none
- path: /sessions/{session_id}/qc
  method: post
  operationId: run_qc_checks_sessions__session_id__qc_post
  x-agentic-access:
    action-class: acting
    consequence: write
    subject: required
    audience: null
    token:
      max-ttl: 900
    escalation:
      human-in-the-loop: conditional
      triggers:
      - abnormal
      - high-value
    audit: required
- path: /sessions/{session_id}/qc/variant-metrics
  method: get
  operationId: get_variant_metrics_sessions__session_id__qc_variant_metrics_get
  x-agentic-access:
    action-class: connected
    consequence: read
    subject: optional
    token:
      max-ttl: 3600
    audit: none
- path: /preprocessing/databases
  method: get
  operationId: get_all_databases_status_preprocessing_databases_get
  x-agentic-access:
    action-class: connected
    consequence: read
    subject: optional
    token:
      max-ttl: 3600
    audit: none
- path: /preprocessing/databases/{db_name}
  method: get
  operationId: get_single_database_status_preprocessing_databases__db_name__get
  x-agentic-access:
    action-class: connected
    consequence: read
    subject: optional
    token:
      max-ttl: 3600
    audit: none
- path: /preprocessing/databases/{db_name}/update
  method: post
  operationId: update_single_database_preprocessing_databases__db_name__update_post
  x-agentic-access:
    action-class: acting
    consequence: write
    subject: required
    audience: null
    token:
      max-ttl: 900
    escalation:
      human-in-the-loop: conditional
      triggers:
      - abnormal
      - high-value
    audit: required
- path: /preprocessing/update-all
  method: post
  operationId: update_all_databases_preprocessing_update_all_post
  x-agentic-access:
    action-class: acting
    consequence: write
    subject: required
    audience: null
    token:
      max-ttl: 900
    escalation:
      human-in-the-loop: conditional
      triggers:
      - abnormal
      - high-value
    audit: required
- path: /preprocessing/rebuild-reference-db
  method: post
  operationId: rebuild_reference_db_preprocessing_rebuild_reference_db_post
  x-agentic-access:
    action-class: acting
    consequence: write
    subject: required
    audience: null
    token:
      max-ttl: 900
    escalation:
      human-in-the-loop: conditional
      triggers:
      - abnormal
      - high-value
    audit: required
- path: /preprocessing/tasks/{task_id}
  method: get
  operationId: get_task_status_preprocessing_tasks__task_id__get
  x-agentic-access:
    action-class: connected
    consequence: read
    subject: optional
    token:
      max-ttl: 3600
    audit: none
- path: /preprocessing/tasks
  method: get
  operationId: list_tasks_preprocessing_tasks_get
  x-agentic-access:
    action-class: connected
    consequence: read
    subject: optional
    token:
      max-ttl: 3600
    audit: none
- path: /preprocessing/vep-cache/stats
  method: get
  operationId: get_vep_cache_stats_preprocessing_vep_cache_stats_get
  x-agentic-access:
    action-class: connected
    consequence: read
    subject: optional
    token:
      max-ttl: 3600
    audit: none
- path: /preprocessing/vep-cache/search
  method: get
  operationId: search_vep_cache_preprocessing_vep_cache_search_get
  x-agentic-access:
    action-class: connected
    consequence: read
    subject: optional
    token:
      max-ttl: 3600
    audit: none
- path: /sessions/{session_id}/notes
  method: get
  operationId: list_notes_sessions__session_id__notes_get
  x-agentic-access:
    action-class: connected
    consequence: read
    subject: optional
    token:
      max-ttl: 3600
    audit: none
- path: /sessions/{session_id}/notes
  method: post
  operationId: create_note_sessions__session_id__notes_post
  x-agentic-access:
    action-class: acting
    consequence: write
    subject: required
    audience: null
    token:
      max-ttl: 900
    escalation:
      human-in-the-loop: conditional
      triggers:
      - abnormal
      - high-value
    audit: required
- path: /sessions/{session_id}/notes/{note_id}
  method: put
  operationId: update_note_sessions__session_id__notes__note_id__put
  x-agentic-access:
    action-class: acting
    consequence: write
    subject: required
    audience: null
    token:
      max-ttl: 900
    escalation:
      human-in-the-loop: conditional
      triggers:
      - abnormal
      - high-value
    audit: required
- path: /sessions/{session_id}/notes/{note_id}
  method: delete
  operationId: delete_note_sessions__session_id__notes__note_id__delete
  x-agentic-access:
    action-class: acting
    consequence: write
    subject: required
    audience: null
    token:
      max-ttl: 900
    escalation:
      human-in-the-loop: conditional
      triggers:
      - abnormal
      - high-value
    audit: required
- path: /sessions/{session_id}/overrides
  method: get
  operationId: list_overrides_sessions__session_id__overrides_get
  x-agentic-access:
    action-class: connected
    consequence: read
    subject: optional
    token:
      max-ttl: 3600
    audit: none
- path: /sessions/{session_id}/overrides
  method: post
  operationId: create_override_sessions__session_id__overrides_post
  x-agentic-access:
    action-class: acting
    consequence: safety-critical
    subject: required
    audience: null
    token:
      max-ttl: 120
      exchange: true
      purpose-required: true
      proof-of-possession: true
    escalation:
      human-in-the-loop: required
    audit: required
- path: /sessions/{session_id}/overrides/{variant_idx}
  method: delete
  operationId: revert_override_sessions__session_id__overrides__variant_idx__delete
  x-agentic-access:
    action-class: acting
    consequence: safety-critical
    subject: required
    audience: null
    token:
      max-ttl: 120
      exchange: true
      purpose-required: true
      proof-of-possession: true
    escalation:
      human-in-the-loop: required
    audit: required
- path: /sessions/{session_id}/clinvar-lite/suggestions/{variant_idx}
  method: get
  operationId: get_export_suggestions_sessions__session_id__clinvar_lite_suggestions__variant_idx__get
  x-agentic-access:
    action-class: connected
    consequence: read
    subject: optional
    token:
      max-ttl: 3600
    audit: none
- path: /sessions/{session_id}/clinvar-lite/export
  method: post
  operationId: export_reviewed_variant_sessions__session_id__clinvar_lite_export_post
  x-agentic-access:
    action-class: acting
    consequence: write
    subject: required
    audience: null
    token:
      max-ttl: 900
    escalation:
      human-in-the-loop: conditional
      triggers:
      - abnormal
      - high-value
    audit: required
- path: /sessions/{session_id}/variants/{variant_idx}/mtdna-curation
  method: patch
  operationId: update_mtdna_curation_sessions__session_id__variants__variant_idx__mtdna_curation_patch
  x-agentic-access:
    action-class: acting
    consequence: write
    subject: required
    audience: null
    token:
      max-ttl: 900
    escalation:
      human-in-the-loop: conditional
      triggers:
      - abnormal
      - high-value
    audit: required
- path: /sessions/{session_id}/variants/{variant_idx}/mtdna-curation
  method: get
  operationId: get_mtdna_curation_sessions__session_id__variants__variant_idx__mtdna_curation_get
  x-agentic-access:
    action-class: connected
    consequence: read
    subject: optional
    token:
      max-ttl: 3600
    audit: none
- path: /sessions/{session_id}/variants/{variant_idx}/mtdna-curation
  method: delete
  operationId: clear_mtdna_curation_sessions__session_id__variants__variant_idx__mtdna_curation_delete
  x-agentic-access:
    action-class: acting
    consequence: write
    subject: required
    audience: null
    token:
      max-ttl: 900
    escalation:
      human-in-the-loop: conditional
      triggers:
      - abnormal
      - high-value
    audit: required
- path: /sessions/{session_id}/variants/{variant_idx}/mtdna-curation/preview
  method: post
  operationId: preview_mtdna_curation_sessions__session_id__variants__variant_idx__mtdna_curation_preview_post
  x-agentic-access:
    action-class: acting
    consequence: write
    subject: required
    audience: null
    token:
      max-ttl: 900
    escalation:
      human-in-the-loop: conditional
      triggers:
      - abnormal
      - high-value
    audit: required
- path: /sessions/{session_id}/review-board
  method: get
  operationId: list_review_board_sessions__session_id__review_board_get
  x-agentic-access:
    action-class: connected
    consequence: read
    subject: optional
    token:
      max-ttl: 3600
    audit: none
- path: /sessions/{session_id}/review-board
  method: post
  operationId: star_variant_sessions__session_id__review_board_post
  x-agentic-access:
    action-class: acting
    consequence: write
    subject: required
    audience: null
    token:
      max-ttl: 900
    escalation:
      human-in-the-loop: conditional
      triggers:
      - abnormal
      - high-value
    audit: required
- path: /sessions/{session_id}/review-board/{variant_idx}
  method: delete
  operationId: unstar_variant_sessions__session_id__review_board__variant_idx__delete
  x-agentic-access:
    action-class: acting
    consequence: write
    subject: required
    audience: null
    token:
      max-ttl: 900
    escalation:
      human-in-the-loop: conditional
      triggers:
      - abnormal
      - high-value
    audit: required
- path: /sessions/{session_id}/reprocess-eligibility
  method: get
  operationId: reprocess_eligibility_sessions__session_id__reprocess_eligibility_get
  x-agentic-access:
    action-class: connected
    consequence: read
    subject: optional
    token:
      max-ttl: 3600
    audit: none
- path: /sessions/{session_id}/reprocess
  method: post
  operationId: reprocess_session_sessions__session_id__reprocess_post
  x-agentic-access:
    action-class: acting
    consequence: write
    subject: required
    audience: null
    token:
      max-ttl: 900
    escalation:
      human-in-the-loop: conditional
      triggers:
      - abnormal
      - high-value
    audit: required
- path: /api/v1/admin/backup
  method: post
  operationId: start_backup_api_v1_admin_backup_post
  x-agentic-access:
    action-class: acting
    consequence: write
    subject: required
    audience: null
    token:
      max-ttl: 900
    escalation:
      human-in-the-loop: conditional
      triggers:
      - abnormal
      - high-value
    audit: required
- path: /api/v1/admin/backup/status/{backup_id}
  method: get
  operationId: get_backup_status_api_v1_admin_backup_status__backup_id__get
  x-agentic-access:
    action-class: connected
    consequence: read
    subject: optional
    token:
      max-ttl: 3600
    audit: none
- path: /api/v1/admin/backups
  method: get
  operationId: list_backups_api_v1_admin_backups_get
  x-agentic-access:
    action-class: connected
    consequence: read
    subject: optional
    token:
      max-ttl: 3600
    audit: none
- path: /api/v1/admin/backup/{backup_id}
  method: delete
  operationId: delete_backup_api_v1_admin_backup__backup_id__delete
  x-agentic-access:
    action-class: acting
    consequence: write
    subject: required
    audience: null
    token:
      max-ttl: 900
    escalation:
      human-in-the-loop: conditional
      triggers:
      - abnormal
      - high-value
    audit: required
- path: /api/v1/admin/backup/{backup_id}/restore
  method: post
  operationId: restore_backup_api_v1_admin_backup__backup_id__restore_post
  x-agentic-access:
    action-class: acting
    consequence: write
    subject: required
    audience: null
    token:
      max-ttl: 900
    escalation:
      human-in-the-loop: conditional
      triggers:
      - abnormal
      - high-value
    audit: required
- path: /sessions/{session_id}/findings
  method: get
  operationId: get_session_findings_sessions__session_id__findings_get
  x-agentic-access:
    action-class: connected
    consequence: read
    subject: optional
    token:
      max-ttl: 3600
    audit: none
- path: /sessions/{session_id}/variants/lookup
  method: get
  operationId: lookup_variant_sessions__session_id__variants_lookup_get
  x-agentic-access:
    action-class: connected
    consequence: read
    subject: optional
    token:
      max-ttl: 3600
    audit: none
- path: /sessions/{session_id}/variants/{variant_idx}/flag
  method: post
  operationId: flag_variant_sessions__session_id__variants__variant_idx__flag_post
  x-agentic-access:
    action-class: acting
    consequence: write
    subject: required
    audience: null
    token:
      max-ttl: 900
    escalation:
      human-in-the-loop: conditional
      triggers:
      - abnormal
      - high-value
    audit: required
- path: /sessions/{session_id}/variants/{variant_idx}/flag
  method: delete
  operationId: unflag_variant_sessions__session_id__variants__variant_idx__flag_delete
  x-agentic-access:
    action-class: acting
    consequence: write
    subject: required
    audience: null
    token:
      max-ttl: 900
    escalation:
      human-in-the-loop: conditional
      triggers:
      - abnormal
      - high-value
    audit: required
- path: /sessions/{session_id}/variants/discordance-analysis
  method: post
  operationId: run_discordance_analysis_sessions__session_id__variants_discordance_analysis_post
  x-agentic-access:
    action-class: acting
    consequence: write
    subject: required
    audience: null
    token:
      max-ttl: 900
    escalation:
      human-in-the-loop: conditional
      triggers:
      - abnormal
      - high-value
    audit: required
- path: /sessions/{session_id}/carriers
  method: get
  operationId: get_carrier_status_sessions__session_id__carriers_get
  x-agentic-access:
    action-class: connected
    consequence: read
    subject: optional
    token:
      max-ttl: 3600
    audit: none
- path: /sessions/{session_id}/recurrence-risk
  method: get
  operationId: get_recurrence_risk_sessions__session_id__recurrence_risk_get
  x-agentic-access:
    action-class: connected
    consequence: read
    subject: optional
    token:
      max-ttl: 3600
    audit: none
- path: /api/v1/simulation/run
  method: post
  operationId: run_simulation_api_v1_simulation_run_post
  x-agentic-access:
    action-class: acting
    consequence: write
    subject: required
    audience: null
    token:
      max-ttl: 900
    escalation:
      human-in-the-loop: conditional
      triggers:
      - abnormal
      - high-value
    audit: required
- path: /api/v1/simulation/status
  method: get
  operationId: get_simulation_status_api_v1_simulation_status_get
  x-agentic-access:
    action-class: connected
    consequence: read
    subject: optional
    token:
      max-ttl: 3600
    audit: none
- path: /api/v1/simulation/cancel
  method: post
  operationId: cancel_simulation_api_v1_simulation_cancel_post
  x-agentic-access:
    action-class: acting
    consequence: write
    subject: required
    audience: null
    token:
      max-ttl: 900
    escalation:
      human-in-the-loop: conditional
      triggers:
      - abnormal
      - high-value
    audit: required
- path: /api/v1/platform/settings
  method: get
  operationId: list_settings_api_v1_platform_settings_get
  x-agentic-access:
    action-class: connected
    consequence: read
    subject: optional
    token:
      max-ttl: 3600
    audit: none
- path: /api/v1/platform/settings/{key}
  method: put
  operationId: update_setting_api_v1_platform_settings__key__put
  x-agentic-access:
    action-class: acting
    consequence: safety-critical
    subject: required
    audience: null
    token:
      max-ttl: 120
      exchange: true
      purpose-required: true
      proof-of-possession: true
    escalation:
      human-in-the-loop: required
    audit: required
- path: /api/v1/platform/settings/{key}
  method: delete
  operationId: clear_setting_api_v1_platform_settings__key__delete
  x-agentic-access:
    action-class: acting
    consequence: safety-critical
    subject: required
    audience: null
    token:
      max-ttl: 120
      exchange: true
      purpose-required: true
      proof-of-possession: true
    escalation:
      human-in-the-loop: required
    audit: required
- path: /api/v1/reclassification/run
  method: post
  operationId: run_reclassification_api_v1_reclassification_run_post
  x-agentic-access:
    action-class: acting
    consequence: write
    subject: required
    audience: null
    token:
      max-ttl: 900
    escalation:
      human-in-the-loop: conditional
      triggers:
      - abnormal
      - high-value
    audit: required
- path: /api/v1/reclassification/status
  method: get
  operationId: get_reclassification_status_api_v1_reclassification_status_get
  x-agentic-access:
    action-class: connected
    consequence: read
    subject: optional
    token:
      max-ttl: 3600
    audit: none
- path: /api/v1/reclassification/runs
  method: get
  operationId: list_runs_api_v1_reclassification_runs_get
  x-agentic-access:
    action-class: connected
    consequence: read
    subject: optional
    token:
      max-ttl: 3600
    audit: none
- path: /api/v1/reclassification/runs/{run_id}
  method: get
  operationId: get_run_api_v1_reclassification_runs__run_id__get
  x-agentic-access:
    action-class: connected
    consequence: read
    subject: optional
    token:
      max-ttl: 3600
    audit: none
- path: /api/v1/reclassification/runs/{run_id}
  method: delete
  operationId: delete_run_api_v1_reclassification_runs__run_id__delete
  x-agentic-access:
    action-class: acting
    consequence: write
    subject: required
    audience: null
    token:
      max-ttl: 900
    escalation:
      human-in-the-loop: conditional
      triggers:
      - abnormal
      - high-value
    audit: required
- path: /api/v1/reclassification/runs/{run_id}/log
  method: get
  operationId: get_run_log_api_v1_reclassification_runs__run_id__log_get
  x-agentic-access:
    action-class: connected
    consequence: read
    subject: optional
    token:
      max-ttl: 3600
    audit: none
- path: /api/v1/reclassification/runs/{run_id}/summary.csv
  method: get
  operationId: get_run_summary_csv_api_v1_reclassification_runs__run_id__summary_csv_get
  x-agentic-access:
    action-class: connected
    consequence: read
    subject: optional
    token:
      max-ttl: 3600
    audit: none
- path: /api/v1/reclassification/sessions/{session_id}/upgrade-report
  method: get
  operationId: get_session_upgrade_report_api_v1_reclassification_sessions__session_id__upgrade_report_get
  x-agentic-access:
    action-class: connected
    consequence: read
    subject: optional
    token:
      max-ttl: 3600
    audit: none
- path: /api/v1/classifier/version
  method: get
  operationId: get_classifier_version_api_v1_classifier_version_get
  x-agentic-access:
    action-class: connected
    consequence: read
    subject: optional
    token:
      max-ttl: 3600
    audit: none
- path: /api/v1/vcf/validate-multisample
  method: post
  operationId: validate_multisample_vcf_api_v1_vcf_validate_multisample_post
  x-agentic-access:
    action-class: acting
    consequence: write
    subject: required
    audience: null
    token:
      max-ttl: 900
    escalation:
      human-in-the-loop: conditional
      triggers:
      - abnormal
      - high-value
    audit: required
- path: /api/v1/families/from-joint-vcf
  method: post
  operationId: create_family_from_joint_vcf_api_v1_families_from_joint_vcf_post
  x-agentic-access:
    action-class: acting
    consequence: write
    subject: required
    audience: null
    token:
      max-ttl: 900
    escalation:
      human-in-the-loop: conditional
      triggers:
      - abnormal
      - high-value
    audit: required
- path: /api/v1/families/from-separate-vcfs
  method: post
  operationId: create_family_from_separate_vcfs_api_v1_families_from_separate_vcfs_post
  x-agentic-access:
    action-class: acting
    consequence: write
    subject: required
    audience: null
    token:
      max-ttl: 900
    escalation:
      human-in-the-loop: conditional
      triggers:
      - abnormal
      - high-value
    audit: required
- path: /internal/sessions/{session_id}/annotations
  method: get
  operationId: get_session_annotations_internal_sessions__session_id__annotations_get
  x-agentic-access:
    action-class: connected
    consequence: read
    subject: optional
    token:
      max-ttl: 3600
    audit: none
- path: /internal/transcript-representations
  method: post
  operationId: map_transcript_representations_internal_transcript_representations_post
  x-agentic-access:
    action-class: acting
    consequence: write
    subject: required
    audience: null
    token:
      max-ttl: 900
    escalation:
      human-in-the-loop: conditional
      triggers:
      - abnormal
      - high-value
    audit: required
- path: /internal/disease-contexts
  method: post
  operationId: disease_contexts_internal_disease_contexts_post
  x-agentic-access:
    action-class: acting
    consequence: write
    subject: required
    audience: null
    token:
      max-ttl: 900
    escalation:
      human-in-the-loop: conditional
      triggers:
      - abnormal
      - high-value
    audit: required
- path: /internal/reclassification/runs/{run_id}/storage-paths
  method: patch
  operationId: update_storage_paths_internal_reclassification_runs__run_id__storage_paths_patch
  x-agentic-access:
    action-class: acting
    consequence: write
    subject: required
    audience: null
    token:
      max-ttl: 900
    escalation:
      human-in-the-loop: conditional
      triggers:
      - abnormal
      - high-value
    audit: required
- path: /internal/reclassification/runs/stuck-migrations
  method: get
  operationId: list_stuck_migrations_internal_reclassification_runs_stuck_migrations_get
  x-agentic-access:
    action-class: connected
    consequence: read
    subject: optional
    token:
      max-ttl: 3600
    audit: none
- path: /api/v1/platform/atlas
  method: get
  operationId: dashboard_api_v1_platform_atlas_get
  x-agentic-access:
    action-class: connected
    consequence: read
    subject: optional
    token:
      max-ttl: 3600
    audit: none
- path: /reference/cytoband/{chrom}
  method: get
  operationId: get_cytoband_reference_cytoband__chrom__get
  x-agentic-access:
    action-class: connected
    consequence: read
    subject: optional
    token:
      max-ttl: 3600
    audit: none
- path: /sessions/{session_id}/browser/reference
  method: get
  operationId: get_browser_reference_sessions__session_id__browser_reference_get
  x-agentic-access:
    action-class: connected
    consequence: read
    subject: optional
    token:
      max-ttl: 3600
    audit: none
- path: /sessions/{session_id}/browser/region
  method: get
  operationId: get_browser_region_sessions__session_id__browser_region_get
  x-agentic-access:
    action-class: connected
    consequence: read
    subject: optional
    token:
      max-ttl: 3600
    audit: none
- path: /sessions/{session_id}/browser/gene/{symbol}
  method: get
  operationId: get_browser_gene_sessions__session_id__browser_gene__symbol__get
  x-agentic-access:
    action-class: connected
    consequence: read
    subject: optional
    token:
      max-ttl: 3600
    audit: none
- path: /sessions/{session_id}/browser/variant-by-hgvs/{hgvs}
  method: get
  operationId: get_browser_variant_by_hgvs_sessions__session_id__browser_variant_by_hgvs__hgvs__get
  x-agentic-access:
    action-class: connected
    consequence: read
    subject: optional
    token:
      max-ttl: 3600
    audit: none
- path: /sessions/{session_id}/browser/overview
  method: get
  operationId: get_browser_overview_sessions__session_id__browser_overview_get
  x-agentic-access:
    action-class: connected
    consequence: read
    subject: optional
    token:
      max-ttl: 3600
    audit: none
- path: /sessions/{session_id}/graph
  method: get
  operationId: get_pangenome_graph_view_sessions__session_id__graph_get
  x-agentic-access:
    action-class: connected
    consequence: read
    subject: optional
    token:
      max-ttl: 3600
    audit: none

Work with this as data

Every access contract here is available over the APIs.io API and to AI agents over MCP. Agentic Access is not yet its own endpoint on the v1 API. Reach it through catalog search and the tag graph, or the MCP server.

MCP server

One button, every client — Claude, Cursor, VS Code and the rest.

https://apis.io/mcp

Tools for agentic access

3 MCP tools reach this
  • apis_io_searchSTART HERE — APIs, providers and tags for one query, each with its total.
  • resolveTurn a domain, URL or GitHub org into the provider it belongs to.
  • find_cohortsEvery scored population of providers in the catalog.
All 92 tools →

Call it yourself

curl for this page
Search the catalog 
curl "https://apis.io/api/v1/search?q=helena-bio-agentic-access&limit=10"
Everything under a tag 
curl "https://apis.io/api/v1/tags/helena-bio-agentic-access"

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