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openapi: 3.2.0
info:
license:
name: Apache 2.0
url: http://www.apache.org/licenses/LICENSE-2.0.html
title: Benchling Workflow Task API
version: 2.0.0
description: 'Represents a unit of work within a `WorkflowTaskGroup`. Each task has a `status` that progresses
through a configurable lifecycle (see `WorkflowTaskStatusLifecycle`), an optional `assignee`
and `responsibleParties` for ownership, and a `scheduledOn` date for planning.
Tasks may or may not produce `WorkflowOutput` instances upon completion. In flowchart workflows, tasks can
have upstream dependencies (`flowchartPreviousItems`) and downstream dependents
(`flowchartNextItems`), with `rootWorkflowTask` pointing to the flowchart''s entry point.
Tasks support schema-defined custom fields via `schemaFields` and can be linked to `Study`
entities for research coordination.'
servers:
- url: /api/v3
security:
- oAuth: []
- basicApiKeyAuth: []
tags:
- description: 'Represents a unit of work within a `WorkflowTaskGroup`. Each task has a `status` that progresses
through a configurable lifecycle (see `WorkflowTaskStatusLifecycle`), an optional `assignee`
and `responsibleParties` for ownership, and a `scheduledOn` date for planning.
Tasks may or may not produce `WorkflowOutput` instances upon completion. In flowchart workflows, tasks can
have upstream dependencies (`flowchartPreviousItems`) and downstream dependents
(`flowchartNextItems`), with `rootWorkflowTask` pointing to the flowchart''s entry point.
Tasks support schema-defined custom fields via `schemaFields` and can be linked to `Study`
entities for research coordination.'
name: WorkflowTask
x-bnch-organization: Benchling
paths:
/workflow-task:
post:
description: Create WorkflowTask.
operationId: WorkflowTask.Create
parameters:
- description: Set to true to access beta operations via /api/v3.
in: header
name: EARLY-ACCESS
required: false
schema:
type: string
requestBody:
content:
application/json:
schema:
$ref: '#/components/schemas/CreateWorkflowTaskInput'
responses:
'201':
content:
application/json:
schema:
$ref: '#/components/schemas/WorkflowTask'
description: Created
'400':
$ref: '#/components/responses/BadRequest'
'403':
$ref: '#/components/responses/Forbidden'
'404':
$ref: '#/components/responses/NotFound'
'429':
$ref: '#/components/responses/TooManyRequests'
'500':
$ref: '#/components/responses/InternalServerError'
summary: Create WorkflowTask
tags:
- WorkflowTask
x-bnch-rate-limit-tier: 4
/workflow-task/items:
get:
description: List WorkflowTask items.
operationId: WorkflowTask.List
parameters:
- $ref: '#/components/parameters/archiveReason.anyOf'
- $ref: '#/components/parameters/archived.anyOf'
- $ref: '#/components/parameters/createdAt.gt'
- $ref: '#/components/parameters/createdAt.gte'
- $ref: '#/components/parameters/createdAt.lt'
- $ref: '#/components/parameters/createdAt.lte'
- $ref: '#/components/parameters/id.anyOf'
- $ref: '#/components/parameters/modifiedAt.gt'
- $ref: '#/components/parameters/modifiedAt.gte'
- $ref: '#/components/parameters/modifiedAt.lt'
- $ref: '#/components/parameters/modifiedAt.lte'
- $ref: '#/components/parameters/nextToken'
- $ref: '#/components/parameters/omit'
- $ref: '#/components/parameters/pageSize'
- $ref: '#/components/parameters/returning'
- description: 'Method by which to order results. Valid sorts are: createdAt (created time, oldest first) and modifiedAt (modified time, oldest first). Use :asc or :desc to specify ascending or descending order. Default is modifiedAt:desc.'
in: query
name: sort
schema:
default: modifiedAt:desc
enum:
- createdAt:asc
- createdAt:desc
- modifiedAt:asc
- modifiedAt:desc
type: string
- description: Set to true to access beta operations via /api/v3.
in: header
name: EARLY-ACCESS
required: false
schema:
type: string
responses:
'200':
content:
application/json:
schema:
$ref: '#/components/schemas/WorkflowTaskPaginatedList'
description: OK
headers: {}
'400':
$ref: '#/components/responses/BadRequest'
'403':
$ref: '#/components/responses/Forbidden'
'404':
$ref: '#/components/responses/NotFound'
'429':
$ref: '#/components/responses/TooManyRequests'
'500':
$ref: '#/components/responses/InternalServerError'
summary: List WorkflowTask items
tags:
- WorkflowTask
x-bnch-rate-limit-tier: 4
/workflow-task/{workflow_task_id}:
get:
description: Get a single WorkflowTask by ID.
operationId: WorkflowTask.Get
parameters:
- description: ID of the WorkflowTask.
in: path
name: workflow_task_id
required: true
schema:
type: string
- $ref: '#/components/parameters/returning'
- $ref: '#/components/parameters/omit'
- description: Set to true to access beta operations via /api/v3.
in: header
name: EARLY-ACCESS
required: false
schema:
type: string
responses:
'200':
content:
application/json:
schema:
$ref: '#/components/schemas/WorkflowTask'
description: OK
headers: {}
'400':
$ref: '#/components/responses/BadRequest'
'403':
$ref: '#/components/responses/Forbidden'
'404':
$ref: '#/components/responses/NotFound'
'429':
$ref: '#/components/responses/TooManyRequests'
'500':
$ref: '#/components/responses/InternalServerError'
summary: Get WorkflowTask by ID
tags:
- WorkflowTask
x-bnch-rate-limit-tier: 5
patch:
description: Update WorkflowTask.
operationId: WorkflowTask.Update
parameters:
- description: ID of the WorkflowTask.
in: path
name: workflow_task_id
required: true
schema:
type: string
- description: Set to true to access beta operations via /api/v3.
in: header
name: EARLY-ACCESS
required: false
schema:
type: string
requestBody:
content:
application/json:
schema:
$ref: '#/components/schemas/UpdateWorkflowTaskInput'
responses:
'200':
content:
application/json:
schema:
$ref: '#/components/schemas/WorkflowTask'
description: OK
'400':
$ref: '#/components/responses/BadRequest'
'403':
$ref: '#/components/responses/Forbidden'
'404':
$ref: '#/components/responses/NotFound'
'429':
$ref: '#/components/responses/TooManyRequests'
'500':
$ref: '#/components/responses/InternalServerError'
summary: Update WorkflowTask
tags:
- WorkflowTask
x-bnch-rate-limit-tier: 4
/workflow-task/{workflow_task_id}/child-tasks/items:
get:
description: List WorkflowTask items.
operationId: WorkflowTask.childTasks.List
parameters:
- description: ID of the WorkflowTask.
in: path
name: workflow_task_id
required: true
schema:
type: string
- description: Set to true to access beta operations via /api/v3.
in: header
name: EARLY-ACCESS
required: false
schema:
type: string
responses:
'200':
content:
application/json:
schema:
$ref: '#/components/schemas/WorkflowTaskUnpaginatedList'
description: OK
headers: {}
'400':
$ref: '#/components/responses/BadRequest'
'403':
$ref: '#/components/responses/Forbidden'
'404':
$ref: '#/components/responses/NotFound'
'429':
$ref: '#/components/responses/TooManyRequests'
'500':
$ref: '#/components/responses/InternalServerError'
summary: List WorkflowTask items
tags:
- WorkflowTask
x-bnch-rate-limit-tier: 4
/workflow-task/{workflow_task_id}/root-workflow-tasks/items:
get:
description: List WorkflowTask items.
operationId: WorkflowTask.rootWorkflowTasks.List
parameters:
- description: ID of the WorkflowTask.
in: path
name: workflow_task_id
required: true
schema:
type: string
- description: Set to true to access beta operations via /api/v3.
in: header
name: EARLY-ACCESS
required: false
schema:
type: string
responses:
'200':
content:
application/json:
schema:
$ref: '#/components/schemas/WorkflowTaskUnpaginatedList'
description: OK
headers: {}
'400':
$ref: '#/components/responses/BadRequest'
'403':
$ref: '#/components/responses/Forbidden'
'404':
$ref: '#/components/responses/NotFound'
'429':
$ref: '#/components/responses/TooManyRequests'
'500':
$ref: '#/components/responses/InternalServerError'
summary: List WorkflowTask items
tags:
- WorkflowTask
x-bnch-rate-limit-tier: 4
/workflow-task:batch-create:
post:
description: Batch create WorkflowTask synchronously in one transaction. Maximum 25 items per request.
operationId: WorkflowTask.BatchCreate
parameters:
- description: Set to true to access beta operations via /api/v3.
in: header
name: EARLY-ACCESS
required: false
schema:
type: string
requestBody:
content:
application/json:
schema:
additionalProperties: false
properties:
items:
items:
$ref: '#/components/schemas/CreateWorkflowTaskInput'
maxItems: 25
minItems: 1
type: array
required:
- items
type: object
responses:
'201':
content:
application/json:
schema:
additionalProperties: false
properties:
items:
items:
$ref: '#/components/schemas/WorkflowTask'
type: array
required:
- items
type: object
description: Created
'400':
$ref: '#/components/responses/BadRequest'
'403':
$ref: '#/components/responses/Forbidden'
'404':
$ref: '#/components/responses/NotFound'
'429':
$ref: '#/components/responses/TooManyRequests'
'500':
$ref: '#/components/responses/InternalServerError'
summary: Batch create WorkflowTask
tags:
- WorkflowTask
x-bnch-rate-limit-tier: 3
/workflow-task:batch-update:
patch:
description: Batch update WorkflowTask synchronously in one transaction. Maximum 25 items per request.
operationId: WorkflowTask.BatchUpdate
parameters:
- description: Set to true to access beta operations via /api/v3.
in: header
name: EARLY-ACCESS
required: false
schema:
type: string
requestBody:
content:
application/json:
schema:
additionalProperties: false
properties:
items:
items:
$ref: '#/components/schemas/UpdateWorkflowTaskInputWithPathParams'
maxItems: 25
minItems: 1
type: array
required:
- items
type: object
responses:
'200':
content:
application/json:
schema:
additionalProperties: false
properties:
items:
items:
$ref: '#/components/schemas/WorkflowTask'
type: array
required:
- items
type: object
description: OK
'400':
$ref: '#/components/responses/BadRequest'
'403':
$ref: '#/components/responses/Forbidden'
'404':
$ref: '#/components/responses/NotFound'
'429':
$ref: '#/components/responses/TooManyRequests'
'500':
$ref: '#/components/responses/InternalServerError'
summary: Batch update WorkflowTask
tags:
- WorkflowTask
x-bnch-rate-limit-tier: 3
/workflow-task:bulk-create:
post:
description: Bulk create WorkflowTask.
operationId: WorkflowTask.BulkCreate
parameters:
- description: Set to true to access beta operations via /api/v3.
in: header
name: EARLY-ACCESS
required: false
schema:
type: string
requestBody:
content:
application/json:
schema:
$ref: '#/components/schemas/BulkImport'
responses:
'202':
content:
application/json:
schema:
$ref: '#/components/schemas/AsyncTaskLink'
description: Task started
'400':
$ref: '#/components/responses/BadRequest'
'403':
$ref: '#/components/responses/Forbidden'
'404':
$ref: '#/components/responses/NotFound'
'429':
$ref: '#/components/responses/TooManyRequests'
'500':
$ref: '#/components/responses/InternalServerError'
summary: Bulk create WorkflowTask
tags:
- WorkflowTask
x-bnch-rate-limit-tier: 2
/workflow-task:bulk-update:
patch:
description: Bulk update WorkflowTask.
operationId: WorkflowTask.BulkUpdate
parameters:
- description: Set to true to access beta operations via /api/v3.
in: header
name: EARLY-ACCESS
required: false
schema:
type: string
requestBody:
content:
application/json:
schema:
$ref: '#/components/schemas/BulkImport'
responses:
'202':
content:
application/json:
schema:
$ref: '#/components/schemas/AsyncTaskLink'
description: Task started
'400':
$ref: '#/components/responses/BadRequest'
'403':
$ref: '#/components/responses/Forbidden'
'404':
$ref: '#/components/responses/NotFound'
'429':
$ref: '#/components/responses/TooManyRequests'
'500':
$ref: '#/components/responses/InternalServerError'
summary: Bulk update WorkflowTask
tags:
- WorkflowTask
x-bnch-rate-limit-tier: 2
components:
schemas:
FieldValueInput:
additionalProperties: false
properties:
value:
$ref: '#/components/schemas/AnyType'
required:
- value
type: object
UserRef:
properties:
__typename:
type: string
id:
format: api_id
type: string
type: object
AnyType: {}
UpdateWorkflowTaskInput:
additionalProperties: false
properties:
assigneeId:
type:
- 'null'
- string
scheduledOn:
description: The date on which the task is scheduled to be executed
format: date
type:
- 'null'
- string
schemaFields:
additionalProperties:
$ref: '#/components/schemas/FieldValueInput'
type: object
status:
description: The status of this task
enum:
- PENDING
- PLANNED
- IN_PROGRESS
- FAILED
- CANCELLED
- INVALID
- COMPLETED
- COMPLETED_AFTER_REVIEW
- ACTIVE
- SKIPPED
- NOT_READY
- READY
type: string
studyIds:
items:
type: string
type: array
type: object
DateValue:
description: A type that represents date values.
properties:
__typename:
type: string
value:
description: The date value.
format: date
type: string
type: object
BooleanValue:
description: A type that represents boolean values.
properties:
__typename:
type: string
value:
description: The boolean value.
type: boolean
type: object
ObjectLinkValue:
description: A type that represents links to other objects.
properties:
__typename:
type: string
value:
$ref: '#/components/schemas/ObjectRef'
description: The object that this value links to, or an Inaccessible object if not found with the current permission set.
type: object
WorkflowTaskPaginatedList:
additionalProperties: false
properties:
items:
items:
$ref: '#/components/schemas/WorkflowTask'
type: array
nextToken:
type: string
type: object
SchemaFieldValue:
description: 'Represents a field value on a schematized object, pairing a `fieldDefinition` (describing the
field''s type and constraints) with its actual `value` (a `BenchlingValue` such as text, number,
date, or link to another object). The value may be null if no value has been set. Used within
the `schemaFields` collection on objects that implement `HasSchema` to provide access to all
custom field values defined by the object''s schema.'
properties:
__typename:
type: string
fieldDefinition:
$ref: '#/components/schemas/SchemaFieldDefinitionRef'
id:
type: string
linkedEntityId:
type:
- 'null'
- string
value:
description: Union of BooleanValue, DateTimeValue, DateValue, DecimalValue, IntegerValue, JsonValue, ObjectLinkValue, ObjectLinkListValue, TextAndUrlValue, TextValue, ArrayValue
oneOf:
- anyOf:
- $ref: '#/components/schemas/BooleanValue'
- $ref: '#/components/schemas/DateTimeValue'
- $ref: '#/components/schemas/DateValue'
- $ref: '#/components/schemas/DecimalValue'
- $ref: '#/components/schemas/IntegerValue'
- $ref: '#/components/schemas/JsonValue'
- $ref: '#/components/schemas/ObjectLinkValue'
- $ref: '#/components/schemas/ObjectLinkListValue'
- $ref: '#/components/schemas/TextAndUrlValue'
- $ref: '#/components/schemas/TextValue'
- $ref: '#/components/schemas/ArrayValue'
discriminator:
propertyName: __typename
- type: 'null'
type: object
InternalServerError:
properties:
detail:
type:
- 'null'
- string
- object
errorId:
type: string
instance:
type: string
status:
type: integer
title:
type:
- 'null'
- string
type:
type: string
required:
- type
- title
- detail
- status
- instance
type: object
DecimalValue:
description: A type that represents decimal value as strings.
properties:
__typename:
type: string
numericValue:
deprecated: true
description: Deprecated. The float representation of the decimal value.
type:
- 'null'
- number
value:
description: The decimal value in a string representation
type:
- 'null'
- string
type: object
WorkflowTaskSchemaRef:
properties:
__typename:
type: string
id:
format: api_id
type: string
type: object
WorkflowTaskUnpaginatedList:
additionalProperties: false
properties:
items:
items:
$ref: '#/components/schemas/WorkflowTask'
type: array
type: object
AsyncTaskLink:
properties:
pollingUri:
format: uri
type: string
taskId:
type: string
type: object
ArrayValue:
description: A type that represents a list of BenchlingValues, used for multi-value cells (e.g. alias columns).
properties:
__typename:
type: string
value:
items:
anyOf:
- $ref: '#/components/schemas/BooleanValue'
- $ref: '#/components/schemas/DateTimeValue'
- $ref: '#/components/schemas/DateValue'
- $ref: '#/components/schemas/DecimalValue'
- $ref: '#/components/schemas/IntegerValue'
- $ref: '#/components/schemas/JsonValue'
- $ref: '#/components/schemas/ObjectLinkValue'
- $ref: '#/components/schemas/ObjectLinkListValue'
- $ref: '#/components/schemas/TextAndUrlValue'
- $ref: '#/components/schemas/TextValue'
description: Union of BooleanValue, DateTimeValue, DateValue, DecimalValue, IntegerValue, JsonValue, ObjectLinkValue, ObjectLinkListValue, TextAndUrlValue, TextValue
discriminator:
propertyName: __typename
type: array
type: object
BulkImport:
example:
fileId: scrfile_jdf8BV24kLmN
properties:
fileId:
description: The API ID of the scratch file (`scrfile_XXXXXXXX`) containing the items to import. The referenced file must be a scratch file whose upload has completed successfully.
type: string
required:
- fileId
type: object
PrincipalRef:
properties:
__typename:
type: string
id:
format: api_id
type: string
type: object
DateTimeValue:
description: A type that represents datetime values.
properties:
__typename:
type: string
value:
description: The datetime value with UTC as the timezone.
format: datetime
type: string
type: object
ObjectRef:
properties:
__typename:
type: string
id:
format: api_id
type: string
type: object
WorkflowTask:
description: 'Represents a unit of work within a `WorkflowTaskGroup`. Each task has a `status` that progresses
through a configurable lifecycle (see `WorkflowTaskStatusLifecycle`), an optional `assignee`
and `responsibleParties` for ownership, and a `scheduledOn` date for planning.
Tasks may or may not produce `WorkflowOutput` instances upon completion. In flowchart workflows, tasks can
have upstream dependencies (`flowchartPreviousItems`) and downstream dependents
(`flowchartNextItems`), with `rootWorkflowTask` pointing to the flowchart''s entry point.
Tasks support schema-defined custom fields via `schemaFields` and can be linked to `Study`
entities for research coordination.'
properties:
__typename:
type: string
archiveReason:
type:
- 'null'
- string
archived:
type: boolean
assignee:
description: The assignee of this task
oneOf:
- $ref: '#/components/schemas/UserRef'
- type: 'null'
childTasks:
description: All descendants of a root task in a flowchart. This will be empty if this task is not a root task.
oneOf:
- format: uri
type: string
- type: 'null'
clonedFrom:
description: The task that this task was cloned from
oneOf:
- $ref: '#/components/schemas/WorkflowTaskRef'
- type: 'null'
createdAt:
format: datetime
type: string
creator:
$ref: '#/components/schemas/PrincipalRef'
displayId:
description: User-friendly ID of the workflow task
type:
- 'null'
- string
executionEntry:
description: The entry that this task is executed in. This is only non-null for tasks with an ENTRY execution type.
oneOf:
- $ref: '#/components/schemas/EntryRef'
- type: 'null'
executionType:
description: The method by which the task of the workflow is executed
enum:
- DIRECT
- ENTRY
- FLOWCHART
- PROCEDURE
- PROCEDURE_METHOD
- PROCEDURE_STEP
- PIPELINE
type: string
id:
type: string
modifiedAt:
format: datetime
type: string
name:
type: string
responsibleParties:
description: The responsible parties for this task
oneOf:
- items:
$ref: '#/components/schemas/ObjectRef'
description: Union of User, Team
type: array
- type: 'null'
rootWorkflowTask:
deprecated: true
description: The root task of the flowchart that this task is a part of
oneOf:
- $ref: '#/components/schemas/WorkflowTaskRef'
- type: 'null'
rootWorkflowTasks:
description: 'All root tasks of the flowchart(s) that this task is a part of. A task may be associated with more than one
root task when branches rooted at different flowchart tasks are pooled together.'
oneOf:
- format: uri
type: string
- type: 'null'
scheduledOn:
description: The date on which the task is scheduled to be executed
format: date
type:
- 'null'
- string
schema:
$ref: '#/components/schemas/WorkflowTaskSchemaRef'
schemaFields:
oneOf:
- items:
$ref: '#/components/schemas/SchemaFieldValue'
type: array
- type: 'null'
status:
description: The status of this task
enum:
- PENDING
- PLANNED
- IN_PROGRESS
- FAILED
- CANCELLED
- INVALID
- COMPLETED
- COMPLETED_AFTER_REVIEW
- ACTIVE
- SKIPPED
- NOT_READY
- READY
type: string
type: object
EntryRef:
properties:
__typename:
type: string
id:
format: api_id
type: string
type: object
UpdateWorkflowTaskInputWithPathParams:
additionalProperties: false
properties:
assigneeId:
type:
- 'null'
- string
id:
type: string
scheduledOn:
description: The date on which the task is scheduled to be executed
format: date
type:
- 'null'
- string
schemaFields:
additionalProperties:
$ref: '#/components/schemas/FieldValueInput'
type: object
status:
description: The status of this task
enum:
- PENDING
- PLANNED
- IN_PROGRESS
- FAILED
- CANCELLED
- INVALID
- COMPLETED
- COMPLETED_AFTER_REVIEW
- ACTIVE
- SKIPPED
- NOT_READY
- READY
type: string
studyIds:
items:
type: string
type: array
required:
- id
type: object
TextValue:
description: A type that represents text (string) values.
properties:
__typename:
type: string
value:
description: The text value. It may or may not be an empty string.
type: string
type: object
CreateWorkflowTaskInput:
additionalProperties: false
properties:
assigneeId:
type: string
scheduledOn:
description: The date on which the task is scheduled to be executed
format: date
type: string
schemaFields:
additionalProperties:
$ref: '#/components/schemas/FieldValueInput'
type: object
studyIds:
items:
type: string
type: array
workflowTaskGroupId:
type: string
required:
- workflowTaskGroupId
type: object
JsonValue:
description: A type that represents JSON values.
properties:
__typename:
type: string
value:
description: The JSON value.
type: object
type: object
TextAndUrlValue:
description: A type that represents text (string) values with an associated URL.
properties:
__typename:
type: string
url:
description: The URL associated with the value. Please use `TextValue` if you don't want a URL.
type: string
value:
description: The text value. It may or may not be an empty string.
type: string
type: object
IntegerValue:
description: A type that represents integer values.
properties:
__typename:
type: string
value:
description: The integer value.
type: integer
type: object
SchemaFieldDefinitionRef:
properties:
__typename:
type: string
id:
format: api_id
type: string
type: object
WorkflowTaskRef:
properties:
__typename:
type: string
id:
format: api_id
type: string
type: object
ObjectLinkListValue:
description: A type that represents a list of links to other objects.
properties:
__typename:
type: string
value:
description: The list of objects that this value links to. Inaccessible objects may be returned instead if the object is not found with the current permission set.
items:
$ref: '#/components/schemas/ObjectRef'
description: Union of AaSequence, Box, Container, CustomEntity, DnaSequence, DropdownOption, Entry, Location, Mixture, Molecule, Plate, Result, RnaSequence, Run, DnaOligo, RnaOligo
type: array
type: object
GeneralError:
properties:
detail:
type:
- 'null'
- string
- object
instance:
type: string
status:
type: integer
title:
type:
- 'null'
- string
type:
type: string
required:
- type
- title
- detail
- status
- instance
type: object
parameters:
pageSize:
description: Number of results to return. Defaults to 50, maximum of 100.
in: query
name: pageSize
schema:
type: integer
createdAt.gte:
description: Datetime, in RFC 3339 format. Time zone defaults to UTC. Restricts results to those created at or after the specified time. e.g. >= 2017-04-30.
in: query
name: createdAt.gte
schema:
format: datetime
type: string
modifiedAt.gt:
description: Datetime, in RFC 3339 format. Time zone defaults to UTC. Restricts results to those modified after the specified time. e.g. > 2017-04-30.
in: query
name: modifiedAt.gt
schema:
format: datetime
type: string
modifiedAt.lte:
description: Datetime, in RFC 3339 format. Time zone defaults to UTC. Restricts results to those modified at or before the specified time. e.g. <= 2017-04-30.
in: query
n
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# Full source: https://raw.githubusercontent.com/api-evangelist/benchling/refs/heads/main/openapi/benchling-workflowtask-api-openapi.yml